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LBM-CaImAn-MATLAB  documentation - Home
  • MBO User Hub
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  • First Steps
    • 0.1. Project Setup
    • 0.2. Pipeline Usage
  • User Guide
    • 1. Assembly
    • 2. Registration
    • 3. Segmentation
    • 4. Axial Collation and Correction
    • 5. Tips and Tricks
    • 6. Troubleshooting
  • Tutorials
    • 1. Explained: Registration
    • 2. Explained: Source Extraction
    • 3. Explained: Axial Offset Correction
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    • 1. Core Functions
    • 2. Utility Functions
    • 3. Internal Functions
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Tutorials

Tutorials#

This section coveres theory underlying pipeline processes.

Tutorials

  • 1. Explained: Registration
    • 1.1. Types of Registration
  • 2. Explained: Source Extraction
    • 2.1. Constrained Non-Negative Matrix Factorization (CNMF)
    • 2.2. Deconvolution
    • 2.3. Validating Neurons and Traces
  • 3. Explained: Axial Offset Correction
    • 3.1. Background

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6. Troubleshooting

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1. Explained: Registration

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