MBO Compute Hub

MBO Compute Hub#

Datasets · Server Guide · Python Environments · HPC

Tutorials, guides and resources to process MBO datasets.

Pipelines and Tools#

MBO Utilities |

I/O utilities, interactive GUI, and processing pipelines for MBO calcium imaging data.

https://millerbrainobservatory.github.io/mbo_utilities/index.html
LBM-Suite2p-Python |

Suite2p-based pipeline for LBM cell detection, signal extraction, and spike deconvolution.

https://millerbrainobservatory.github.io/LBM-Suite2p-Python

Primary pipelines — recommended starting point for new users.

LBM-CaImAn-MATLAB |

MATLAB implementation of CaImAn for LBM source extraction.

LBM-CaImAn-Python |

Python implementation of CaImAn for LBM source extraction.

LBM-EXTRACT-MATLAB |

EXTRACT algorithm for robust cell detection in noisy data.

Maintained pipelines — available for further implementation upon request.

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External Resources#

Microscopy and Imaging

Blog Posts and Forums