3. LBM Step 2: Registration#
3.1. Registration: Correct for rigid/non-rigid movement#
Apply the nonrigid motion correction (NoRMCorre) algorithm for motion correction.
View pre/most correction movie
Use quality metrics to evaluate registration quality
from pathlib import Path
import os
import sys
import numpy as np
# import zarr
import pandas as pd
import logging
import mesmerize_core as mc
from mesmerize_viz import *
from mesmerize_core.caiman_extensions.cnmf import cnmf_cache
from caiman.summary_images import correlation_pnr
# import napari
# import matplotlib.pyplot as plt
sys.path.append('../..') # TODO: Take this out when we upload to pypi
# import lbm_caiman_python as lcp
if os.name == "nt":
# disable the cache on windows, this will be automatic in a future version
cnmf_cache.set_maxsize(0)
pd.options.display.max_colwidth = 120
from mesmerize_core import *
import tifffile
import numpy as np
from matplotlib import pyplot as plt
import seaborn as sns
from copy import deepcopy
import pandas as pd
3.2. Logging#
# set up logging
debug = True
logger = logging.getLogger("caiman")
logger.setLevel(logging.WARNING)
handler = logging.StreamHandler()
log_format = logging.Formatter("%(relativeCreated)12d [%(filename)s:%(funcName)10s():%(lineno)s] [%(process)d] %(message)s")
handler.setFormatter(log_format)
logger.addHandler(handler)
# set env variables
os.environ["MKL_NUM_THREADS"] = "1"
os.environ["OPENBLAS_NUM_THREADS"] = "1"
os.environ["VECLIB_MAXIMUM_THREADS"] = "1"
if debug:
logging.getLogger("caiman").setLevel(logging.DEBUG)
3.3. (optional): View hardware information#
# !pip install cloudmesh-cmd5
!cms help # dont forget to call it after the install as it sets some defaults
!cms sysinfo
*** No help on # dont forget to call it after the install as it sets some defaults
+------------------+----------------------------------------------------------------------------------------------+
| Attribute | Value |
+------------------+----------------------------------------------------------------------------------------------+
| cpu | |
| cpu_cores | 24 |
| cpu_count | 32 |
| cpu_threads | 32 |
| date | 2024-09-26 12:48:53.444986 |
| frequency | scpufreq(current=3200.0, min=0.0, max=3200.0) |
| mem.available | 97.5 GiB |
| mem.free | 97.5 GiB |
| mem.percent | 23.7 % |
| mem.total | 127.8 GiB |
| mem.used | 30.3 GiB |
| platform.version | ('10', '10.0.19045', 'SP0', 'Multiprocessor Free') |
| python | 3.10.8 | packaged by conda-forge | (main, Nov 22 2022, 08:16:53) [MSC v.1929 64 bit (AMD64)] |
| python.pip | 24.0 |
| python.version | 3.10.8 |
| sys.platform | win32 |
| uname.machine | AMD64 |
| uname.node | RBO-C2 |
| uname.processor | Intel64 Family 6 Model 183 Stepping 1, GenuineIntel |
| uname.release | 10 |
| uname.system | Windows |
| uname.version | 10.0.19045 |
| user | RBO |
+------------------+----------------------------------------------------------------------------------------------+
3.4. User input: input data path and plane number#
the same path as pre_processing parent_dir = Path().home() / ‘caiman_data’ / ‘animal_01’ / ‘session_01’
# File locations:
# - batch.pickle parent directory
# - input movie
# parent_path = Path().home() / "caiman_data_org"
parent_path = Path().home() / "caiman_data" / 'animal_01' / 'session_01'
save_path = parent_path / 'motion_correction'
# for TIFF
# tiff_path = parent_path / 'tiff'
# tiff_files = [x for x in Path(tiff_path).glob('*.tif*')]
# for ZARR
movie_path = parent_path
movie = zarr.open(movie_path)['mov']
reg_batch_path = parent_path / 'batch.pickle'
df = mc.load_batch(reg_batch_path)
mc.set_parent_raw_data_path(str(parent_path))
# df = lcp.lbm_load_batch(reg_batch_path, overwrite=False)
df=df.caiman.reload_from_disk()
df
| algo | item_name | input_movie_path | params | outputs | added_time | ran_time | algo_duration | comments | uuid | |
|---|---|---|---|---|---|---|---|---|---|---|
| 0 | mcorr | extracted_plane_1 | tiff\extracted_plane_1.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': b32f41bf-a9a5-4965-be7c-e6779e854328\b32f41bf-a9a5-4965-be7c-e6779e854328_mean_projection.n... | 2024-09-26T11:56:54 | 2024-09-26T12:02:55 | 77.3 sec | None | b32f41bf-a9a5-4965-be7c-e6779e854328 |
| 1 | cnmf | cnmf_1 | b32f41bf-a9a5-4965-be7c-e6779e854328\b32f41bf-a9a5-4965-be7c-e6779e854328-extracted_plane_1_els__d1_583_d2_536_d3_1_... | {'main': {'fr': 9.62, 'dxy': (1.0, 1.0), 'decay_time': 0.4, 'strides': (48, 48), 'overlaps': (24, 24), 'max_shifts':... | {'mean-projection-path': a057e39e-a2df-41d3-8217-83c9cd7ffb6d\a057e39e-a2df-41d3-8217-83c9cd7ffb6d_mean_projection.n... | 2024-09-26T16:26:20 | 2024-09-26T16:28:48 | 143.18 sec | None | a057e39e-a2df-41d3-8217-83c9cd7ffb6d |
| 2 | cnmf | cnmf_1 | b32f41bf-a9a5-4965-be7c-e6779e854328\b32f41bf-a9a5-4965-be7c-e6779e854328-extracted_plane_1_els__d1_583_d2_536_d3_1_... | {'main': {'fr': 9.62, 'dxy': (1.0, 1.0), 'decay_time': 0.4, 'p': 2, 'nb': 1, 'rf': 40, 'K': 150, 'gSig': [7.5, 7.5],... | {'mean-projection-path': 0d8d3234-eab7-4f90-9405-53a2ad7917dc\0d8d3234-eab7-4f90-9405-53a2ad7917dc_mean_projection.n... | 2024-10-01T12:09:56 | 2024-10-01T12:26:42 | 996.44 sec | None | 0d8d3234-eab7-4f90-9405-53a2ad7917dc |
4. Default registration parameters#
The parameters are passed directly to caiman, this means you need to use the same exact names for the parameters and you can use all the parameters that you can use with caiman - because it’s just passing them to caiman.
The parameters dict for a mesmerize batch item must have the following structure. Put all the parameters in a dict under a key called main. The main dict is then fed directly to caiman.
{"main": {... params directly passed to caiman}}
pix_res = 1
mx = 10/pix_res
max_shifts = (int(mx), int(mx)) # maximum allowed rigid shift in pixels (view the movie to get a sense of motion)
max_deviation_rigid = 3 # maximum deviation allowed for patch with respect to rigid shifts
pw_rigid = True # flag for performing rigid or piecewise rigid motion correction
shifts_opencv = True # flag for correcting motion using bicubic interpolation (otherwise FFT interpolation is used)
border_nan = 'copy' # replicate values along the boundary (if True, fill in with NaN)
mcorr_params = {
'main': # this key is necessary for specifying that these are the "main" params for the algorithm
{
'var_name_hdf5': 'mov',
'max_shifts': max_shifts,
'strides': [48, 48],
'overlaps': [24, 24],
'max_deviation_rigid': 3,
'border_nan':border_nan,
'pw_rigid': pw_rigid,
'gSig_filt': None
},
}
# # Add a "batch item" to the DataFrame this is the combination of:
# * algorithm to run, `algo`
# * input movie to run the algorithm on, `input_movie_path`
# * parameters for the specified algorithm, `params`
# * a name for you to keep track of things, usually the same as the movie filename, `item_name`
df.caiman.add_item(
algo='mcorr',
input_movie_path=movie_path / 'mov',
params=mcorr_params,
item_name=movie_path.stem, # filename of the movie, but can be anything
)
df=df.caiman.reload_from_disk()
df
| algo | item_name | input_movie_path | params | outputs | added_time | ran_time | algo_duration | comments | uuid | |
|---|---|---|---|---|---|---|---|---|---|---|
| 0 | mcorr | extracted_plane_1 | tiff\extracted_plane_1.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': b32f41bf-a9a5-4965-be7c-e6779e854328\b32f41bf-a9a5-4965-be7c-e6779e854328_mean_projection.n... | 2024-09-26T11:56:54 | 2024-09-26T12:02:55 | 77.3 sec | None | b32f41bf-a9a5-4965-be7c-e6779e854328 |
| 1 | cnmf | cnmf_1 | b32f41bf-a9a5-4965-be7c-e6779e854328\b32f41bf-a9a5-4965-be7c-e6779e854328-extracted_plane_1_els__d1_583_d2_536_d3_1_... | {'main': {'fr': 9.62, 'dxy': (1.0, 1.0), 'decay_time': 0.4, 'strides': (48, 48), 'overlaps': (24, 24), 'max_shifts':... | {'mean-projection-path': a057e39e-a2df-41d3-8217-83c9cd7ffb6d\a057e39e-a2df-41d3-8217-83c9cd7ffb6d_mean_projection.n... | 2024-09-26T16:26:20 | 2024-09-26T16:28:48 | 143.18 sec | None | a057e39e-a2df-41d3-8217-83c9cd7ffb6d |
| 2 | cnmf | cnmf_1 | b32f41bf-a9a5-4965-be7c-e6779e854328\b32f41bf-a9a5-4965-be7c-e6779e854328-extracted_plane_1_els__d1_583_d2_536_d3_1_... | {'main': {'fr': 9.62, 'dxy': (1.0, 1.0), 'decay_time': 0.4, 'p': 2, 'nb': 1, 'rf': 40, 'K': 150, 'gSig': [7.5, 7.5],... | {'mean-projection-path': 0d8d3234-eab7-4f90-9405-53a2ad7917dc\0d8d3234-eab7-4f90-9405-53a2ad7917dc_mean_projection.n... | 2024-10-01T12:09:56 | 2024-10-01T12:26:42 | 996.44 sec | None | 0d8d3234-eab7-4f90-9405-53a2ad7917dc |
5. First registration run: preset with good defaults#
Technical notes: On Linux & Mac it will run in subprocess but on Windows it will run in the local kernel.
df.iloc[1].caiman.run()
Running b32f41bf-a9a5-4965-be7c-e6779e854328 with local backend
starting mc
838959 [cluster.py:setup_cluster():225] [10504] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
WARNING:caiman.cluster:The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
WARNING:root:In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
ERROR:tifffile:<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
ERROR:tifffile:<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
ERROR:tifffile:<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
ERROR:tifffile:<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
ERROR:tifffile:<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
mc finished successfully!
computing projections
Computing correlation image
916256 [cluster.py:stop_server():177] [10504] stop_cluster(): done
finished computing correlation image
INFO:caiman.cluster:stop_cluster(): done
<mesmerize_core.caiman_extensions.common.DummyProcess at 0x15a2c71f250>
from ipywidgets import Tab, Text, Button, VBox, interact_manual, interactive
@interact_manual(parent_path=str(parent_path), batch_path=str(batch_path))
def start_widget(parent_path, batch_path):
mc.set_parent_raw_data_path(parent_path)
df = mc.load_batch(batch_path)
tab = Tab()
# mcorr_container = df.mcorr.viz()
mcorr_container = df.mcorr.viz(start_index=0)
tab.children = [mcorr_container.show()]
tab.titles = ["mcorr"]
display(tab)
5.1. Preview Motion Correction#
Before running a grid search for the best parameter set, preview your registration results
viz = df.mcorr.viz(data_options=["input", "mcorr", "mean", "corr"], start_index=1)
viz.show()
c:\Users\RBO\anaconda3\envs\mescore\lib\site-packages\ipydatagrid\datagrid.py:512: UserWarning: Index name of 'index' is not round-trippable.
schema = pd.io.json.build_table_schema(dataframe)
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
c:\Users\RBO\anaconda3\envs\mescore\lib\site-packages\fastplotlib\graphics\_features\_base.py:34: UserWarning: converting float64 array to float32
warn(f"converting {array.dtype} array to float32")
c:\Users\RBO\anaconda3\envs\mescore\lib\site-packages\fastplotlib\widgets\image.py:78: UserWarning: Invalid 'window size' value for function: <function mean at 0x0000014720A30280>, setting 'window size' = None for this function. Valid values are integers >= 3.
warn(
viewer = napari.Viewer()
viewer.add_image(mcorr_movie, name=f'plane_2_a')
viewer.add_image(mcorr_movie2, name=f'plane_2_b')
6. Registration Grid Search (if you need it!)#
More runs with varying parameters, stored on disk in the dataframe batch.pickle
# copy the mcorr_params2 dict to make some changes
# some variants of max_shifts
from copy import deepcopy
for shifts in [2,32]:
for strides in [12,64]:
overlaps = int(strides / 2)
# deep copy is the safest way to copy dicts
new_params = deepcopy(mcorr_params)
# assign the "max_shifts"
new_params["main"]["pw_rigid"] = True
new_params["main"]["max_shifts"] = (shifts, shifts)
new_params["main"]["strides"] = (strides, strides)
new_params["main"]["overlaps"] = (overlaps, overlaps)
df.caiman.add_item(
algo='mcorr',
input_movie_path=tiff_files[0],
params=new_params,
item_name=tiff_files[0].stem, # filename of the movie, but can be anything
)
df.caiman.reload_from_disk()
| algo | item_name | input_movie_path | params | outputs | added_time | ran_time | algo_duration | comments | uuid | |
|---|---|---|---|---|---|---|---|---|---|---|
| 0 | mcorr | extracted_plane_1 | tiff/extracted_plane_1.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': [48, 48], 'overlaps': [24, 24], 'max_deviation_... | {'mean-projection-path': 'e7d6ee76-b236-4fdc-a978-da72abb5b6cd/e7d6ee76-b236-4fdc-a978-da72abb5b6cd_mean_projection.... | 2024-09-12T17:38:56 | 2024-09-13T00:40:44 | 41.1 sec | None | e7d6ee76-b236-4fdc-a978-da72abb5b6cd |
| 1 | mcorr | extracted_plane_1 | tiff/extracted_plane_1.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (2, 2), 'strides': (12, 12), 'overlaps': (6, 6), 'max_deviation_rigi... | None | 2024-09-13T00:53:41 | None | None | None | 1ea42667-276d-486f-a63e-0cbbf0744ca8 |
| 2 | mcorr | extracted_plane_1 | tiff/extracted_plane_1.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (2, 2), 'strides': (64, 64), 'overlaps': (32, 32), 'max_deviation_ri... | None | 2024-09-13T00:53:41 | None | None | None | 9aa2b5f3-14f0-4fbb-bfed-907c50969918 |
| 3 | mcorr | extracted_plane_1 | tiff/extracted_plane_1.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (32, 32), 'strides': (12, 12), 'overlaps': (6, 6), 'max_deviation_ri... | None | 2024-09-13T00:53:41 | None | None | None | 703926de-8926-4613-a9e6-abe5c0cbedeb |
| 4 | mcorr | extracted_plane_1 | tiff/extracted_plane_1.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (32, 32), 'strides': (64, 64), 'overlaps': (32, 32), 'max_deviation_... | None | 2024-09-13T00:53:41 | None | None | None | c0685366-5d8c-4dec-b607-44265f5033cc |
for i, row in df.iterrows():
if row["outputs"] is not None: # item has already been run
continue # skip
process = row.caiman.run()
# on Windows you MUST reload the batch dataframe after every iteration because it uses the `local` backend.
# this is unnecessary on Linux & Mac
# "DummyProcess" is used for local backend so this is automatic
if process.__class__.__name__ == "DummyProcess":
df = df.caiman.reload_from_disk()
/home/mbo/caiman_data_org/animal_01/session_01/1ea42667-276d-486f-a63e-0cbbf0744ca8.runfile
starting mc
MotionCorrect() called.
/home/mbo/caiman_data_org/animal_01/session_01/tiff/extracted_plane_1.tif
mov
/home/mbo/caiman_data_org/animal_01/session_01/tiff/extracted_plane_1.tif
mov
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
/home/mbo/caiman_data_org/animal_01/session_01/9aa2b5f3-14f0-4fbb-bfed-907c50969918.runfile
2024-09-13 00:53:48.814012: E external/local_xla/xla/stream_executor/cuda/cuda_dnn.cc:9261] Unable to register cuDNN factory: Attempting to register factory for plugin cuDNN when one has already been registered
2024-09-13 00:53:48.814044: E external/local_xla/xla/stream_executor/cuda/cuda_fft.cc:607] Unable to register cuFFT factory: Attempting to register factory for plugin cuFFT when one has already been registered
2024-09-13 00:53:48.814390: E external/local_xla/xla/stream_executor/cuda/cuda_blas.cc:1515] Unable to register cuBLAS factory: Attempting to register factory for plugin cuBLAS when one has already been registered
2024-09-13 00:53:48.817005: I tensorflow/core/platform/cpu_feature_guard.cc:182] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: SSE4.1 SSE4.2 AVX AVX2 FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
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0%| | 0/1 [00:00<?, ?it/s]
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starting mc
MotionCorrect() called.
/home/mbo/caiman_data_org/animal_01/session_01/tiff/extracted_plane_1.tif
mov
/home/mbo/caiman_data_org/animal_01/session_01/tiff/extracted_plane_1.tif
mov
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
/home/mbo/caiman_data_org/animal_01/session_01/703926de-8926-4613-a9e6-abe5c0cbedeb.runfile
2024-09-13 00:55:32.175065: E external/local_xla/xla/stream_executor/cuda/cuda_dnn.cc:9261] Unable to register cuDNN factory: Attempting to register factory for plugin cuDNN when one has already been registered
2024-09-13 00:55:32.175096: E external/local_xla/xla/stream_executor/cuda/cuda_fft.cc:607] Unable to register cuFFT factory: Attempting to register factory for plugin cuFFT when one has already been registered
2024-09-13 00:55:32.175457: E external/local_xla/xla/stream_executor/cuda/cuda_blas.cc:1515] Unable to register cuBLAS factory: Attempting to register factory for plugin cuBLAS when one has already been registered
2024-09-13 00:55:32.178227: I tensorflow/core/platform/cpu_feature_guard.cc:182] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: SSE4.1 SSE4.2 AVX AVX2 FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
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starting mc
MotionCorrect() called.
/home/mbo/caiman_data_org/animal_01/session_01/tiff/extracted_plane_1.tif
mov
/home/mbo/caiman_data_org/animal_01/session_01/tiff/extracted_plane_1.tif
mov
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
/home/mbo/caiman_data_org/animal_01/session_01/c0685366-5d8c-4dec-b607-44265f5033cc.runfile
2024-09-13 00:56:14.293577: E external/local_xla/xla/stream_executor/cuda/cuda_dnn.cc:9261] Unable to register cuDNN factory: Attempting to register factory for plugin cuDNN when one has already been registered
2024-09-13 00:56:14.293616: E external/local_xla/xla/stream_executor/cuda/cuda_fft.cc:607] Unable to register cuFFT factory: Attempting to register factory for plugin cuFFT when one has already been registered
2024-09-13 00:56:14.294074: E external/local_xla/xla/stream_executor/cuda/cuda_blas.cc:1515] Unable to register cuBLAS factory: Attempting to register factory for plugin cuBLAS when one has already been registered
2024-09-13 00:56:14.297998: I tensorflow/core/platform/cpu_feature_guard.cc:182] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: SSE4.1 SSE4.2 AVX AVX2 FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
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starting mc
MotionCorrect() called.
/home/mbo/caiman_data_org/animal_01/session_01/tiff/extracted_plane_1.tif
mov
/home/mbo/caiman_data_org/animal_01/session_01/tiff/extracted_plane_1.tif
mov
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
2024-09-13 00:58:00.267324: E external/local_xla/xla/stream_executor/cuda/cuda_dnn.cc:9261] Unable to register cuDNN factory: Attempting to register factory for plugin cuDNN when one has already been registered
2024-09-13 00:58:00.267357: E external/local_xla/xla/stream_executor/cuda/cuda_fft.cc:607] Unable to register cuFFT factory: Attempting to register factory for plugin cuFFT when one has already been registered
2024-09-13 00:58:00.267712: E external/local_xla/xla/stream_executor/cuda/cuda_blas.cc:1515] Unable to register cuBLAS factory: Attempting to register factory for plugin cuBLAS when one has already been registered
2024-09-13 00:58:00.270576: I tensorflow/core/platform/cpu_feature_guard.cc:182] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: SSE4.1 SSE4.2 AVX AVX2 FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
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7. Distinguishing parameter variants#
We can see that there are many parameter variants, but it is not easy to see the differences in parameters between the rows that have the same item_name.
We can use the caiman.get_params_diffs() to see the unique parameters between rows with the same item_name
diffs = df.caiman.get_params_diffs(algo="mcorr", item_name=df.iloc[0]["item_name"])
diffs
| overlaps | max_shifts | strides | |
|---|---|---|---|
| 0 | [24, 24] | (10, 10) | [48, 48] |
| 1 | (6, 6) | (2, 2) | (12, 12) |
| 2 | (32, 32) | (2, 2) | (64, 64) |
| 3 | (6, 6) | (32, 32) | (12, 12) |
| 4 | (32, 32) | (32, 32) | (64, 64) |
8. Use the varients to organize results to run multiple batch items.#
df.iterrows() iterates through rows and returns the numerical index and row for each iteration
plane = 1
df = df.caiman.reload_from_disk()
# first item is just the raw movie
movies = [df.iloc[0].caiman.get_input_movie()]
subplot_names = ["raw"]
means = [df.iloc[0].caiman.get_projection("mean")]
# get the param diffs to set plot titles
param_diffs = df.caiman.get_params_diffs("mcorr", item_name=df.iloc[0]["item_name"])
# add all the mcorr outputs to the list
for i, row in df.iterrows():
if row.algo != 'mcorr':
continue
# add to the list of movies to plot
movies.append(row.mcorr.get_output())
max_shifts = param_diffs.iloc[i]["max_shifts"][0]
strides = param_diffs.iloc[i]["strides"][0]
overlaps = param_diffs.iloc[i]["overlaps"][0]
# subplot title to show dataframe index
subplot_names.append(f"ix {i}: max_sh: {max_shifts}, str: {strides}, ove: {overlaps}")
# mean images which we'll use later
means.append(row.caiman.get_projection("mean"))
ERROR:tifffile:<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
iw_zfish = fpl.ImageWidget(
data=[movies[0], movies[1]],
names=['Raw', 'Corrected'],
cmap="gray",
histogram_widget=False
)
iw_zfish.show()
/home/mbo/miniconda3/envs/mbo-caiman/lib/python3.11/site-packages/fastplotlib/graphics/_features/_base.py:34: UserWarning: converting float64 array to float32
| attribute | type | description |
ERROR:wgpu:Draw error: Validation Error (7)
ERROR:wgpu:Present error: present() is called without a preceeding call to get_c… (7)
ERROR:wgpu:Draw error: Validation Error (8)
ERROR:wgpu:Present error: present() is called without a preceeding call to get_c… (8)
/home/mbo/miniconda3/envs/mbo-caiman/lib/python3.11/site-packages/fastplotlib/graphics/_features/_base.py:34: UserWarning: converting float64 array to float32
| attribute | type | description |
napari.view_image(movies[0], name=subplot_names[0])
# mcorr_movie = df.iloc[0].mcorr.get_output()
# mcorr_movie2 = df.iloc[-1].mcorr.get_output()
# corr, pnr = correlation_pnr(mcorr_movie, swap_dim=False)
# corr2, pnr2 = correlation_pnr(mcorr_movie2, swap_dim=False)
Viewer(camera=Camera(center=(0.0, 299.5, 279.5), zoom=1.3079464285714284, angles=(0.0, 0.0, 90.0), perspective=0.0, mouse_pan=True, mouse_zoom=True), cursor=Cursor(position=(864.0, 1.0, 0.0), scaled=True, style=<CursorStyle.STANDARD: 'standard'>, size=1.0), dims=Dims(ndim=3, ndisplay=2, order=(0, 1, 2), axis_labels=('0', '1', '2'), rollable=(True, True, True), range=(RangeTuple(start=0.0, stop=1729.0, step=1.0), RangeTuple(start=0.0, stop=599.0, step=1.0), RangeTuple(start=0.0, stop=559.0, step=1.0)), margin_left=(0.0, 0.0, 0.0), margin_right=(0.0, 0.0, 0.0), point=(864.0, 299.0, 279.0), last_used=0), grid=GridCanvas(stride=1, shape=(-1, -1), enabled=False), layers=[<Image layer 'raw' at 0x7f202c877f50>], help='use <2> for transform', status='Ready', tooltip=Tooltip(visible=False, text=''), theme='dark', title='napari', mouse_over_canvas=False, mouse_move_callbacks=[], mouse_drag_callbacks=[], mouse_double_click_callbacks=[], mouse_wheel_callbacks=[<function dims_scroll at 0x7f22ca409da0>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, _keymap={})
import napari
viewer = napari.Viewer()
viewer.add_image(mcorr_movie, name=f'plane_2_a')
viewer.add_image(mcorr_movie2, name=f'plane_2_b')
viewer.add_image(corr, name="Mean Correlation")
viewer.add_image(corr2, name="Mean Correlation2")
<Image layer 'Mean Correlation2' at 0x7fe77fe5cad0>
napari.view_image(df.iloc[0].mcorr.get_output()[::2, ...])
napari.current_viewer().add_image(df.iloc[0].caiman.get_input_movie()[::2, ...])
ERROR:tifffile:<tifffile.TiffFile 'extracted_plane_21.tif'> shaped series axes do not match shape
<Image layer 'pnr' at 0x7f4cd3c0cc10>
8.1. Correlation metrics#
Create a couple of summary images of the movie, including:
maximum projection (the maximum value of each pixel)
correlation image (how correlated each pixel is with its neighbors)
If a pixel comes from an active neural component it will tend to be highly correlated with its neighbors.
row_index = i
mean_proj = df.iloc[i].caiman.get_projection("mean")
max_proj = df.iloc[i].caiman.get_projection("max")
std_proj = df.iloc[i].caiman.get_projection("std")
corr_image = df.iloc[i].caiman.get_corr_image()
# viewer.add_image(mcorr_movie, rgb=False, multiscale=False)
# viewer.add_image(input_movie['plane_1'], rgb=False, multiscale=False)
viewer = napari.Viewer()
viewer.add_image(mean_proj)
viewer.add_image(std_proj)
viewer.add_image(max_proj)
viewer.add_image(corr_image)
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
Cell In[5], line 1
----> 1 row_index = i
3 mean_proj = df.iloc[i].caiman.get_projection("mean")
4 max_proj = df.iloc[i].caiman.get_projection("max")
NameError: name 'i' is not defined
8.2. Pixel Shifts#
row_idx = 0
shifts = df.iloc[row_idx].mcorr.get_shifts()
shifts = shifts[1]
shiftsx = [x[0] for x in shifts]
shiftsy = [x[1] for x in shifts]
shiftsx_mean = [np.mean(x) for x in shiftsx]
shiftsy_mean = [np.mean(y) for y in shiftsy]
##%%
xr = list(range(1730))
plt.plot(xr, shiftsx_mean)
plt.title('Mean X-Shifts') # TODO: std error bars, napari layer
plt.xlabel("timestep (frames)")
plt.ylabel("# pixels shufted in X dimension")
plt.show()
xr = list(range(1730))
plt.title('Mean Y-Shifts') # TODO: std error bars, napari layer
plt.xlabel("timestep (frames)")
plt.ylabel("# pixels shufted in Y dimension")
plt.plot(xr, shiftsy_mean)
[<matplotlib.lines.Line2D at 0x7fd709740b50>]
9. Optional, cleanup DataFrame#
Use the index that works best and all other items.
Remove batch items (i.e. rows) using df.caiman.remove_item(<item_uuid>). This also cleans up the output data in the batch directory.
Note: On windows calling remove_item() will raise a PermissionError if you have the memmap file open. The workaround is to shutdown the current kernel and then use df.caiman.remove_item(). For example, you can keep another notebook that you use just for cleaning unwanted mcorr items.
There is currently no way to close a numpy.memmap: https://github.com/numpy/numpy/issues/13510
Indices are always reset when you use caiman.remove_item(). UUIDs are always preserved.
df=df.caiman.reload_from_disk()
df
| algo | item_name | input_movie_path | params | outputs | added_time | ran_time | algo_duration | comments | uuid | |
|---|---|---|---|---|---|---|---|---|---|---|
| 0 | mcorr | plane_1 | animal_01/session_01/plane_1.zarr | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': '5ed9532f-a5d9-4ecb-bdae-f14b37fc2ef2/5ed9532f-a5d9-4ecb-bdae-f14b37fc2ef2_mean_projection.... | 2024-09-09T14:50:33 | 2024-09-10T09:55:53 | 42.42 sec | None | 5ed9532f-a5d9-4ecb-bdae-f14b37fc2ef2 |
| 1 | mcorr | plane_1 | animal_01/session_01/plane_1.zarr | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 'aab79e23-ebcc-45cb-a12b-6f7e3eae935c/aab79e23-ebcc-45cb-a12b-6f7e3eae935c_mean_projection.... | 2024-09-09T14:50:49 | 2024-09-10T09:57:13 | 42.87 sec | None | aab79e23-ebcc-45cb-a12b-6f7e3eae935c |
| 2 | mcorr | plane_1 | animal_01/session_01/plane_1.zarr | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': '247620be-d14b-46da-b6ba-6c73bf607b02/247620be-d14b-46da-b6ba-6c73bf607b02_mean_projection.... | 2024-09-09T14:55:09 | 2024-09-10T09:57:59 | 42.13 sec | None | 247620be-d14b-46da-b6ba-6c73bf607b02 |
| 3 | mcorr | plane_1 | animal_01/session_01/plane_1.zarr | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': [48, 48], 'overlaps': [24, 24], 'max_deviation_... | None | 2024-09-10T10:46:06 | None | None | None | 00dc740c-7cf4-4cbb-b239-4cd8fc0439a2 |
| 4 | mcorr | plane_1 | animal_01/session_01/plane_1.zarr | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': [48, 48], 'overlaps': [24, 24], 'max_deviation_... | None | 2024-09-10T11:05:25 | None | None | None | 0b04ece1-0bf1-4d76-8688-f4091e06ca2b |
rows_keep = [2]
for i, row in df.iterrows():
if i not in rows_keep:
df.caiman.remove_item(row.uuid, safe_removal=False)
df
| algo | item_name | input_movie_path | params | outputs | added_time | ran_time | algo_duration | comments | uuid | |
|---|---|---|---|---|---|---|---|---|---|---|
| 0 | mcorr | plane_1 | animal_01/session_01/plane_1.zarr | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': '247620be-d14b-46da-b6ba-6c73bf607b02/247620be-d14b-46da-b6ba-6c73bf607b02_mean_projection.... | 2024-09-09T14:55:09 | 2024-09-10T09:57:59 | 42.13 sec | None | 247620be-d14b-46da-b6ba-6c73bf607b02 |
df.caiman.save_to_disk()
9.1. Evaluate Results: Optical Flow#
import caiman as cm
# fnames = [df.iloc[0].mcorr.get_]
# fnames = [str(df.iloc[0].mcorr.get_output_path())]
fnames = str(movie_path)
fnames_rig = str(df.iloc[0].mcorr.get_output_path())
#% compute metrics for the results (TAKES TIME!!)
final_size = np.subtract(movie[1,:,:].shape, 2 * 2) # remove pixels in the boundaries
winsize = 100
swap_dim = False
resize_fact_flow = .2 # downsample for computing ROF
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
Cell In[9], line 7
4 fnames_rig = str(df.iloc[0].mcorr.get_output_path())
6 #% compute metrics for the results (TAKES TIME!!)
----> 7 final_size = np.subtract(movie[1,:,:].shape, 2 * 2) # remove pixels in the boundaries
8 winsize = 100
9 swap_dim = False
NameError: name 'movie' is not defined
%%capture
tmpl_orig, correlations_orig, flows_orig, norms_orig, crispness_orig = cm.motion_correction.compute_metrics_motion_correction(
fnames[0], final_size[0], final_size[1], swap_dim, winsize=winsize, play_flow=False, resize_fact_flow=resize_fact_flow)
tmpl_rig, correlations_rig, flows_rig, norms_rig, crispness_rig = cm.motion_correction.compute_metrics_motion_correction(
fnames_rig[0], final_size[0], final_size[1],
swap_dim, winsize=winsize, play_flow=False, resize_fact_flow=resize_fact_flow)
# tmpl_els, correlations_els, flows_els, norms_els, crispness_els = cm.motion_correction.compute_metrics_motion_correction(
# mc.fname_tot_els[0], final_size[0], final_size[1],
# swap_dim, winsize=winsize, play_flow=False, resize_fact_flow=resize_fact_flow)
fpath = cm.paths.fname_derived_presuffix(str(fnames), 'metrics', swapsuffix='npz')
fpath
'/home/mbo/caiman_data_org/animal_01/session_01/plane_1_metrics.npz'
##%% plot the results of Residual Optical Flow
fls = [cm.paths.fname_derived_presuffix(str(fnames), 'metrics', swapsuffix='npz'), cm.paths.fname_derived_presuffix(str(fnames_rig), 'metrics', swapsuffix='npz')]
plt.figure(figsize = (20,10))
for cnt, fl, metr in zip(range(len(fls)), fls, ['raw','corrected',]):
print('fl')
if Path(fl).suffix == '.npz':
with np.load(str(fl)) as ld:
print(str(np.mean(ld['norms'])) + '+/-' + str(np.std(ld['norms'])) +
' ; ' + str(ld['smoothness']) + ' ; ' + str(ld['smoothness_corr']))
plt.subplot(len(fls), 3, 1 + 3 * cnt)
plt.ylabel(metr)
try:
mean_img = np.mean(cm.load(fl[:-12] + '.tif'))[12:-12, 12:-12]
except:
try:
mean_img = np.mean(
cm.load(fl[:-12] + '.tif'), 0)[12:-12, 12:-12]
except:
try:
mean_img = np.mean(
cm.load(fl[:-12] + '.hdf5'), 0)[12:-12, 12:-12]
except:
try:
mean_img = np.mean(cm.load(fl[:-12] + '.zarr'), 0)[12:-12, 12:-12]
except:
print(fl[:-12] + '.zarr')
lq, hq = np.nanpercentile(mean_img, [.5, 99.5])
plt.imshow(mean_img, vmin=lq, vmax=hq)
plt.title('Mean Optical Flow')
plt.subplot(len(fls), 3, 3 * cnt + 2)
plt.imshow(ld['img_corr'], vmin=0, vmax=.35)
plt.title('Corr image')
plt.subplot(len(fls), 3, 3 * cnt + 3)
flows = ld['flows']
plt.imshow(np.mean(
np.sqrt(flows[:, :, :, 0]**2 + flows[:, :, :, 1]**2), 0), vmin=0, vmax=0.3)
plt.colorbar()
lq, hq = np.nanpercentile(mean_img, [.5, 99.5])
plt.imshow(mean_img, vmin=lq, vmax=hq)
plt.title('Mean Optical Flow')
plt.subplot(len(fls), 3, 3 * cnt + 2)
plt.imshow(ld['img_corr'], vmin=0, vmax=.35)
plt.title('Corr image')
plt.subplot(len(fls), 3, 3 * cnt + 3)
flows = ld['flows']
plt.imshow(np.mean(
np.sqrt(flows[:, :, :, 0]**2 + flows[:, :, :, 1]**2), 0), vmin=0, vmax=0.3)
plt.colorbar()
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
Cell In[8], line 2
1 ##%% plot the results of Residual Optical Flow
----> 2 fls = [cm.paths.fname_derived_presuffix(str(fnames), 'metrics', swapsuffix='npz'), cm.paths.fname_derived_presuffix(str(fnames_rig), 'metrics', swapsuffix='npz')]
4 plt.figure(figsize = (20,10))
5 for cnt, fl, metr in zip(range(len(fls)), fls, ['raw','corrected',]):
NameError: name 'cm' is not defined
plt.figure(figsize = (20,20))
plt.subplot(211); plt.plot(correlations_orig); plt.plot(correlations_rig);
plt.legend(['Original','Rigid','PW-Rigid'])
plt.subplot(223); plt.scatter(correlations_orig, correlations_rig); plt.xlabel('Original');
plt.ylabel('Rigid'); plt.plot([0.3,0.7],[0.3,0.7],'r--')
axes = plt.gca(); axes.set_xlim([0.3,0.7]); axes.set_ylim([0.3,0.7]); plt.axis('square');
9.2. Apply registration using the same parameters to the remaining z-planes#
# # Add a "batch item" to the DataFrame this is the combination of:
# * algorithm to run, `algo`
# * input movie to run the algorithm on, `input_movie_path`
# * parameters for the specified algorithm, `params`
# * a name for you to keep track of things, usually the same as the movie filename, `item_name`
for i in range(2, 30):
movie = parent_path / 'tiff' / f'extracted_plane_{i}.tif'
df.caiman.add_item(
algo='mcorr',
input_movie_path=movie,
params= df.iloc[0].params,
item_name=f'plane_{i}', # filename of the movie, but can be anything
)
df=df.caiman.reload_from_disk()
df
| algo | item_name | input_movie_path | params | outputs | added_time | ran_time | algo_duration | comments | uuid | |
|---|---|---|---|---|---|---|---|---|---|---|
| 0 | mcorr | extracted_plane_1 | tiff\extracted_plane_1.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': b32f41bf-a9a5-4965-be7c-e6779e854328\b32f41bf-a9a5-4965-be7c-e6779e854328_mean_projection.n... | 2024-09-26T11:56:54 | 2024-09-26T12:02:55 | 77.3 sec | None | b32f41bf-a9a5-4965-be7c-e6779e854328 |
| 1 | cnmf | cnmf_1 | b32f41bf-a9a5-4965-be7c-e6779e854328\b32f41bf-a9a5-4965-be7c-e6779e854328-extracted_plane_1_els__d1_583_d2_536_d3_1_... | {'main': {'fr': 9.62, 'dxy': (1.0, 1.0), 'decay_time': 0.4, 'strides': (48, 48), 'overlaps': (24, 24), 'max_shifts':... | {'mean-projection-path': a057e39e-a2df-41d3-8217-83c9cd7ffb6d\a057e39e-a2df-41d3-8217-83c9cd7ffb6d_mean_projection.n... | 2024-09-26T16:26:20 | 2024-09-26T16:28:48 | 143.18 sec | None | a057e39e-a2df-41d3-8217-83c9cd7ffb6d |
| 2 | cnmf | cnmf_1 | b32f41bf-a9a5-4965-be7c-e6779e854328\b32f41bf-a9a5-4965-be7c-e6779e854328-extracted_plane_1_els__d1_583_d2_536_d3_1_... | {'main': {'fr': 9.62, 'dxy': (1.0, 1.0), 'decay_time': 0.4, 'p': 2, 'nb': 1, 'rf': 40, 'K': 150, 'gSig': [7.5, 7.5],... | {'mean-projection-path': 0d8d3234-eab7-4f90-9405-53a2ad7917dc\0d8d3234-eab7-4f90-9405-53a2ad7917dc_mean_projection.n... | 2024-10-01T12:09:56 | 2024-10-01T12:26:42 | 996.44 sec | None | 0d8d3234-eab7-4f90-9405-53a2ad7917dc |
| 3 | mcorr | plane_1 | tiff\extracted_plane_1.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': c220fb8a-cef9-4784-91a2-84f33d760b75\c220fb8a-cef9-4784-91a2-84f33d760b75_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:28:06 | 83.34 sec | None | c220fb8a-cef9-4784-91a2-84f33d760b75 |
| 4 | mcorr | plane_2 | tiff\extracted_plane_2.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': ecdbaa07-8893-4352-8658-19a8357306b8\ecdbaa07-8893-4352-8658-19a8357306b8_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:29:29 | 83.69 sec | None | ecdbaa07-8893-4352-8658-19a8357306b8 |
| 5 | mcorr | plane_3 | tiff\extracted_plane_3.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 48bad9bd-8a15-4d42-ae64-cb199ff498bc\48bad9bd-8a15-4d42-ae64-cb199ff498bc_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:30:53 | 83.81 sec | None | 48bad9bd-8a15-4d42-ae64-cb199ff498bc |
| 6 | mcorr | plane_4 | tiff\extracted_plane_4.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 29217cfc-8575-4c35-b8b0-2fb29a4cb416\29217cfc-8575-4c35-b8b0-2fb29a4cb416_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:32:17 | 82.93 sec | None | 29217cfc-8575-4c35-b8b0-2fb29a4cb416 |
| 7 | mcorr | plane_5 | tiff\extracted_plane_5.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': f9e87c87-913e-4027-a3bd-83c4c7182493\f9e87c87-913e-4027-a3bd-83c4c7182493_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:33:39 | 82.31 sec | None | f9e87c87-913e-4027-a3bd-83c4c7182493 |
| 8 | mcorr | plane_6 | tiff\extracted_plane_6.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': baf9fc6a-9159-46fd-a6b8-603d02c30c99\baf9fc6a-9159-46fd-a6b8-603d02c30c99_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:35:02 | 82.48 sec | None | baf9fc6a-9159-46fd-a6b8-603d02c30c99 |
| 9 | mcorr | plane_7 | tiff\extracted_plane_7.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 7afd6d4c-7787-4e02-8dfc-fd0ce578164d\7afd6d4c-7787-4e02-8dfc-fd0ce578164d_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:36:24 | 81.99 sec | None | 7afd6d4c-7787-4e02-8dfc-fd0ce578164d |
| 10 | mcorr | plane_8 | tiff\extracted_plane_8.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 28a3cd15-7671-4a5e-8744-9e8e73e35ee9\28a3cd15-7671-4a5e-8744-9e8e73e35ee9_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:37:48 | 83.8 sec | None | 28a3cd15-7671-4a5e-8744-9e8e73e35ee9 |
| 11 | mcorr | plane_9 | tiff\extracted_plane_9.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 379d8c22-52c6-4a6a-ae8e-69ccd1d5c5ed\379d8c22-52c6-4a6a-ae8e-69ccd1d5c5ed_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:39:11 | 83.03 sec | None | 379d8c22-52c6-4a6a-ae8e-69ccd1d5c5ed |
| 12 | mcorr | plane_10 | tiff\extracted_plane_10.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 679fe640-ee6c-480c-bc71-e941000b8851\679fe640-ee6c-480c-bc71-e941000b8851_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:40:33 | 82.51 sec | None | 679fe640-ee6c-480c-bc71-e941000b8851 |
| 13 | mcorr | plane_11 | tiff\extracted_plane_11.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': d5f2446a-0f42-472a-b969-735c7980b96b\d5f2446a-0f42-472a-b969-735c7980b96b_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:41:56 | 82.22 sec | None | d5f2446a-0f42-472a-b969-735c7980b96b |
| 14 | mcorr | plane_12 | tiff\extracted_plane_12.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 888fa033-522f-4fec-bbd6-607f93fffc11\888fa033-522f-4fec-bbd6-607f93fffc11_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:43:19 | 82.73 sec | None | 888fa033-522f-4fec-bbd6-607f93fffc11 |
| 15 | mcorr | plane_13 | tiff\extracted_plane_13.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 9c53c1bc-e865-4977-89da-1c1bff7d4d21\9c53c1bc-e865-4977-89da-1c1bff7d4d21_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:44:41 | 81.82 sec | None | 9c53c1bc-e865-4977-89da-1c1bff7d4d21 |
| 16 | mcorr | plane_14 | tiff\extracted_plane_14.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 6f3101c4-9792-497a-939f-5a4780848a0d\6f3101c4-9792-497a-939f-5a4780848a0d_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:46:03 | 82.3 sec | None | 6f3101c4-9792-497a-939f-5a4780848a0d |
| 17 | mcorr | plane_15 | tiff\extracted_plane_15.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 41ed61cb-4b3e-4117-9db6-e054b1d8c697\41ed61cb-4b3e-4117-9db6-e054b1d8c697_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:47:26 | 82.44 sec | None | 41ed61cb-4b3e-4117-9db6-e054b1d8c697 |
| 18 | mcorr | plane_16 | tiff\extracted_plane_16.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 625b34c3-eae3-4ad8-8015-5cc48122c7ec\625b34c3-eae3-4ad8-8015-5cc48122c7ec_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:48:48 | 82.0 sec | None | 625b34c3-eae3-4ad8-8015-5cc48122c7ec |
| 19 | mcorr | plane_17 | tiff\extracted_plane_17.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': e6a54884-a8a8-447b-be78-70957a62f161\e6a54884-a8a8-447b-be78-70957a62f161_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:50:11 | 83.41 sec | None | e6a54884-a8a8-447b-be78-70957a62f161 |
| 20 | mcorr | plane_18 | tiff\extracted_plane_18.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': c21edffc-96ae-4103-b0e7-9ae4af82a6a7\c21edffc-96ae-4103-b0e7-9ae4af82a6a7_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:51:33 | 81.7 sec | None | c21edffc-96ae-4103-b0e7-9ae4af82a6a7 |
| 21 | mcorr | plane_19 | tiff\extracted_plane_19.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': bbcf4810-f29e-4fde-a425-fa81a34e7c14\bbcf4810-f29e-4fde-a425-fa81a34e7c14_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:52:56 | 82.56 sec | None | bbcf4810-f29e-4fde-a425-fa81a34e7c14 |
| 22 | mcorr | plane_20 | tiff\extracted_plane_20.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 3f1399d9-951f-46b7-8424-8a5019984015\3f1399d9-951f-46b7-8424-8a5019984015_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:54:19 | 83.5 sec | None | 3f1399d9-951f-46b7-8424-8a5019984015 |
| 23 | mcorr | plane_21 | tiff\extracted_plane_21.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 666389a4-64ae-48e1-bcb0-381a48cff336\666389a4-64ae-48e1-bcb0-381a48cff336_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:55:42 | 82.36 sec | None | 666389a4-64ae-48e1-bcb0-381a48cff336 |
| 24 | mcorr | plane_22 | tiff\extracted_plane_22.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 09e7e82e-3365-409d-b961-33e51d022ba5\09e7e82e-3365-409d-b961-33e51d022ba5_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:57:06 | 83.45 sec | None | 09e7e82e-3365-409d-b961-33e51d022ba5 |
| 25 | mcorr | plane_23 | tiff\extracted_plane_23.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 450d0648-35c0-4528-b199-c448b4b3de7a\450d0648-35c0-4528-b199-c448b4b3de7a_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:58:28 | 82.03 sec | None | 450d0648-35c0-4528-b199-c448b4b3de7a |
| 26 | mcorr | plane_24 | tiff\extracted_plane_24.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 31b2befb-4833-4a1e-83ef-4c177244bd33\31b2befb-4833-4a1e-83ef-4c177244bd33_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T13:59:51 | 82.94 sec | None | 31b2befb-4833-4a1e-83ef-4c177244bd33 |
| 27 | mcorr | plane_25 | tiff\extracted_plane_25.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': b60dc323-4e70-4c7f-88f8-f7255e9252c5\b60dc323-4e70-4c7f-88f8-f7255e9252c5_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T14:01:15 | 83.64 sec | None | b60dc323-4e70-4c7f-88f8-f7255e9252c5 |
| 28 | mcorr | plane_26 | tiff\extracted_plane_26.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 6edd066c-6801-4c96-b71e-a34f3f446514\6edd066c-6801-4c96-b71e-a34f3f446514_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T14:02:36 | 80.91 sec | None | 6edd066c-6801-4c96-b71e-a34f3f446514 |
| 29 | mcorr | plane_27 | tiff\extracted_plane_27.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': df55466a-8e2e-44d7-93d6-bc2ba0c5ab01\df55466a-8e2e-44d7-93d6-bc2ba0c5ab01_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T14:03:58 | 81.79 sec | None | df55466a-8e2e-44d7-93d6-bc2ba0c5ab01 |
| 30 | mcorr | plane_28 | tiff\extracted_plane_28.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 2f2fa5da-3177-42ac-967c-240a46091e79\2f2fa5da-3177-42ac-967c-240a46091e79_mean_projection.n... | 2024-10-01T13:24:33 | 2024-10-01T14:05:20 | 82.38 sec | None | 2f2fa5da-3177-42ac-967c-240a46091e79 |
| 31 | mcorr | plane_2 | tiff\extracted_plane_2.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 18c557b7-916c-4ba8-bf46-063123d3c29b\18c557b7-916c-4ba8-bf46-063123d3c29b_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:06:42 | 81.43 sec | None | 18c557b7-916c-4ba8-bf46-063123d3c29b |
| 32 | mcorr | plane_3 | tiff\extracted_plane_3.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': d70524da-a75c-46b7-9acc-3641c13dddf2\d70524da-a75c-46b7-9acc-3641c13dddf2_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:08:04 | 82.03 sec | None | d70524da-a75c-46b7-9acc-3641c13dddf2 |
| 33 | mcorr | plane_4 | tiff\extracted_plane_4.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 1fde15f9-7508-4151-a3f7-abbfb049de5e\1fde15f9-7508-4151-a3f7-abbfb049de5e_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:09:25 | 80.73 sec | None | 1fde15f9-7508-4151-a3f7-abbfb049de5e |
| 34 | mcorr | plane_5 | tiff\extracted_plane_5.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 835e0530-9996-4f09-b468-4c711ab1a2be\835e0530-9996-4f09-b468-4c711ab1a2be_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:10:46 | 80.85 sec | None | 835e0530-9996-4f09-b468-4c711ab1a2be |
| 35 | mcorr | plane_6 | tiff\extracted_plane_6.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 9ab637ab-1599-42b0-8a8f-bb916078334f\9ab637ab-1599-42b0-8a8f-bb916078334f_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:12:09 | 82.83 sec | None | 9ab637ab-1599-42b0-8a8f-bb916078334f |
| 36 | mcorr | plane_7 | tiff\extracted_plane_7.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': bbc4d279-ff99-47ce-b19a-573caca031a4\bbc4d279-ff99-47ce-b19a-573caca031a4_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:13:30 | 81.64 sec | None | bbc4d279-ff99-47ce-b19a-573caca031a4 |
| 37 | mcorr | plane_8 | tiff\extracted_plane_8.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': cca66748-953a-40e6-b632-93504557308e\cca66748-953a-40e6-b632-93504557308e_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:14:51 | 80.73 sec | None | cca66748-953a-40e6-b632-93504557308e |
| 38 | mcorr | plane_9 | tiff\extracted_plane_9.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 815119b9-1134-49fb-8474-4802b87c34db\815119b9-1134-49fb-8474-4802b87c34db_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:16:13 | 81.25 sec | None | 815119b9-1134-49fb-8474-4802b87c34db |
| 39 | mcorr | plane_10 | tiff\extracted_plane_10.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 2b934ad5-c218-4d5a-88a9-7c3ef36ea834\2b934ad5-c218-4d5a-88a9-7c3ef36ea834_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:17:35 | 81.96 sec | None | 2b934ad5-c218-4d5a-88a9-7c3ef36ea834 |
| 40 | mcorr | plane_11 | tiff\extracted_plane_11.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': b0a5619f-2e53-421d-8e4a-2c132f52402b\b0a5619f-2e53-421d-8e4a-2c132f52402b_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:18:58 | 82.94 sec | None | b0a5619f-2e53-421d-8e4a-2c132f52402b |
| 41 | mcorr | plane_12 | tiff\extracted_plane_12.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': b200d246-0e9d-4139-9d7e-99cfaf6570db\b200d246-0e9d-4139-9d7e-99cfaf6570db_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:20:20 | 82.28 sec | None | b200d246-0e9d-4139-9d7e-99cfaf6570db |
| 42 | mcorr | plane_13 | tiff\extracted_plane_13.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 83c32466-e08e-4095-a759-a0ce150ad42a\83c32466-e08e-4095-a759-a0ce150ad42a_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:21:43 | 82.69 sec | None | 83c32466-e08e-4095-a759-a0ce150ad42a |
| 43 | mcorr | plane_14 | tiff\extracted_plane_14.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 9a3d5048-d6f2-46e8-b869-e9306ecde5e3\9a3d5048-d6f2-46e8-b869-e9306ecde5e3_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:23:05 | 82.31 sec | None | 9a3d5048-d6f2-46e8-b869-e9306ecde5e3 |
| 44 | mcorr | plane_15 | tiff\extracted_plane_15.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 0eac92e7-a207-4253-887d-67d43cd95113\0eac92e7-a207-4253-887d-67d43cd95113_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:24:28 | 82.7 sec | None | 0eac92e7-a207-4253-887d-67d43cd95113 |
| 45 | mcorr | plane_16 | tiff\extracted_plane_16.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 0dea60c2-2f90-4dc4-9a89-908a832e24c6\0dea60c2-2f90-4dc4-9a89-908a832e24c6_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:25:52 | 83.52 sec | None | 0dea60c2-2f90-4dc4-9a89-908a832e24c6 |
| 46 | mcorr | plane_17 | tiff\extracted_plane_17.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 7d540ed9-c9f3-499a-a121-a268271c95f6\7d540ed9-c9f3-499a-a121-a268271c95f6_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:27:14 | 81.68 sec | None | 7d540ed9-c9f3-499a-a121-a268271c95f6 |
| 47 | mcorr | plane_18 | tiff\extracted_plane_18.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 81e688aa-2e5b-4fc5-87e3-e67ab2c44d20\81e688aa-2e5b-4fc5-87e3-e67ab2c44d20_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:28:35 | 80.68 sec | None | 81e688aa-2e5b-4fc5-87e3-e67ab2c44d20 |
| 48 | mcorr | plane_19 | tiff\extracted_plane_19.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 494267f7-3659-4e00-bd1b-13a682d64c3a\494267f7-3659-4e00-bd1b-13a682d64c3a_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:29:58 | 83.17 sec | None | 494267f7-3659-4e00-bd1b-13a682d64c3a |
| 49 | mcorr | plane_20 | tiff\extracted_plane_20.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 91e15f4e-4a24-4359-b46a-4f940f43a5f2\91e15f4e-4a24-4359-b46a-4f940f43a5f2_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:31:20 | 81.91 sec | None | 91e15f4e-4a24-4359-b46a-4f940f43a5f2 |
| 50 | mcorr | plane_21 | tiff\extracted_plane_21.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': ce3ddb5f-6eb5-405d-9709-64ddca398408\ce3ddb5f-6eb5-405d-9709-64ddca398408_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:32:42 | 82.2 sec | None | ce3ddb5f-6eb5-405d-9709-64ddca398408 |
| 51 | mcorr | plane_22 | tiff\extracted_plane_22.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 1808716b-35a5-4bb7-a7d3-62778918084d\1808716b-35a5-4bb7-a7d3-62778918084d_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:34:04 | 81.48 sec | None | 1808716b-35a5-4bb7-a7d3-62778918084d |
| 52 | mcorr | plane_23 | tiff\extracted_plane_23.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 5784d042-f190-4105-b015-04f40130dc18\5784d042-f190-4105-b015-04f40130dc18_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:35:25 | 81.39 sec | None | 5784d042-f190-4105-b015-04f40130dc18 |
| 53 | mcorr | plane_24 | tiff\extracted_plane_24.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': dd42d981-b7a7-48c5-8c8c-45d58501d47d\dd42d981-b7a7-48c5-8c8c-45d58501d47d_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:36:47 | 81.92 sec | None | dd42d981-b7a7-48c5-8c8c-45d58501d47d |
| 54 | mcorr | plane_25 | tiff\extracted_plane_25.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': fe332115-db88-4765-b7d8-bb7d123483d6\fe332115-db88-4765-b7d8-bb7d123483d6_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:38:12 | 84.54 sec | None | fe332115-db88-4765-b7d8-bb7d123483d6 |
| 55 | mcorr | plane_26 | tiff\extracted_plane_26.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': c3383064-ae07-4fe6-af82-a907d69ad79d\c3383064-ae07-4fe6-af82-a907d69ad79d_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:39:33 | 81.21 sec | None | c3383064-ae07-4fe6-af82-a907d69ad79d |
| 56 | mcorr | plane_27 | tiff\extracted_plane_27.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 47e076e1-6c2c-48d2-96c0-e7f48c3b6155\47e076e1-6c2c-48d2-96c0-e7f48c3b6155_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:40:57 | 82.91 sec | None | 47e076e1-6c2c-48d2-96c0-e7f48c3b6155 |
| 57 | mcorr | plane_28 | tiff\extracted_plane_28.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': ee1c326b-1718-4e69-b6b2-36726b3acc18\ee1c326b-1718-4e69-b6b2-36726b3acc18_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:42:20 | 83.01 sec | None | ee1c326b-1718-4e69-b6b2-36726b3acc18 |
| 58 | mcorr | plane_29 | tiff\extracted_plane_29.tif | {'main': {'var_name_hdf5': 'mov', 'max_shifts': (10, 10), 'strides': (48, 48), 'overlaps': (24, 24), 'max_deviation_... | {'mean-projection-path': 5f1223e3-6473-43b8-9e86-cd03792053d1\5f1223e3-6473-43b8-9e86-cd03792053d1_mean_projection.n... | 2024-10-01T13:25:30 | 2024-10-01T14:43:42 | 82.39 sec | None | 5f1223e3-6473-43b8-9e86-cd03792053d1 |
for i in range(2, 30):
movie = parent_path / 'tiff' / f'extracted_plane_{i}.tif'
df.caiman.run(
algo='mcorr',
input_movie_path=movie,
params= df.iloc[0].params,
item_name=f'plane_{i}', # filename of the movie, but can be anything
)
for i, row in df.iterrows():
if row["outputs"] is not None: # item has already been run
continue # skip
process = row.caiman.run()
# on Windows you MUST reload the batch dataframe after every iteration because it uses the `local` backend.
# this is unnecessary on Linux & Mac
# "DummyProcess" is used for local backend so this is automatic
if process.__class__.__name__ == "DummyProcess":
df = df.caiman.reload_from_disk()
Running c220fb8a-cef9-4784-91a2-84f33d760b75 with local backend
starting mc
879795 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
879910 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
880745 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
880746 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
880746 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-50.0
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
881246 [movies.py:apply_shifts():424] [29072] cubic interpolation
881799 [movies.py:apply_shifts():424] [29072] cubic interpolation
882402 [movies.py:apply_shifts():424] [29072] cubic interpolation
882603 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 50.0
882603 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
882604 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
882609 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
882609 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
882610 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
882611 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
882612 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
882612 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
882613 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
882613 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
882614 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
882614 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
882615 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
882616 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
882616 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
882617 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
882617 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
882618 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
882619 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
906861 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
906987 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 50.0
906987 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
906988 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_1.tif
<tifffile.TiffFile 'extracted_plane_1.tif'> shaped series axes do not match shape
906992 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
906993 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\c220fb8a-cef9-4784-91a2-84f33d760b75\extracted_plane_1_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
906994 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
906995 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
906995 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
906996 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
906996 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
906997 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
906997 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
906997 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
906998 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
906998 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
906999 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
906999 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
907000 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
907000 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
907001 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
907001 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
939460 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
963129 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running ecdbaa07-8893-4352-8658-19a8357306b8 with local backend
starting mc
963290 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
963395 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_2.tif'> shaped series axes do not match shape
964435 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
964435 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
964436 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-45.0
<tifffile.TiffFile 'extracted_plane_2.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_2.tif'> shaped series axes do not match shape
964921 [movies.py:apply_shifts():424] [29072] cubic interpolation
965466 [movies.py:apply_shifts():424] [29072] cubic interpolation
966010 [movies.py:apply_shifts():424] [29072] cubic interpolation
966204 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 45.0
966205 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
966206 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_2.tif'> shaped series axes do not match shape
966214 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
966214 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
966215 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
966216 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
966216 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
966216 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
966217 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
966218 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
966218 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
966219 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
966219 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
966220 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
966220 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
966221 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
966221 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
966222 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
966222 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
990836 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
990957 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 45.0
990958 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
990958 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_2.tif
<tifffile.TiffFile 'extracted_plane_2.tif'> shaped series axes do not match shape
990963 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
990965 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\ecdbaa07-8893-4352-8658-19a8357306b8\extracted_plane_2_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
990965 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
990965 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
990966 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
990966 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
990967 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
990967 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
990968 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
990968 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
990968 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
990969 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
990969 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
990970 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
990970 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
990971 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
990971 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
990972 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1023864 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
1046975 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 48bad9bd-8a15-4d42-ae64-cb199ff498bc with local backend
starting mc
1047142 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
1047259 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_3.tif'> shaped series axes do not match shape
1048963 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
1048963 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
1048964 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-66.0
<tifffile.TiffFile 'extracted_plane_3.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_3.tif'> shaped series axes do not match shape
1049455 [movies.py:apply_shifts():424] [29072] cubic interpolation
1050055 [movies.py:apply_shifts():424] [29072] cubic interpolation
1050660 [movies.py:apply_shifts():424] [29072] cubic interpolation
1050863 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 66.0
1050864 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
1050864 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_3.tif'> shaped series axes do not match shape
1050868 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1050869 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1050869 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1050870 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1050870 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1050871 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1050871 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1050872 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1050872 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1050873 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1050873 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1050873 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1050874 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1050874 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1050875 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1050875 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1050875 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1076106 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
1076219 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 66.0
1076220 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
1076220 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_3.tif
<tifffile.TiffFile 'extracted_plane_3.tif'> shaped series axes do not match shape
1076224 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1076226 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\48bad9bd-8a15-4d42-ae64-cb199ff498bc\extracted_plane_3_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
1076226 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1076226 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1076227 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1076227 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1076228 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1076228 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1076228 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1076229 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1076229 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1076230 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1076230 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1076230 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1076231 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1076231 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1076232 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1076232 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1108012 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
1130946 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 29217cfc-8575-4c35-b8b0-2fb29a4cb416 with local backend
starting mc
1131125 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
1131248 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_4.tif'> shaped series axes do not match shape
1132367 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
1132368 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
1132368 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-92.0
<tifffile.TiffFile 'extracted_plane_4.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_4.tif'> shaped series axes do not match shape
1132618 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -20.0
1132619 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
1132919 [movies.py:apply_shifts():424] [29072] cubic interpolation
1133180 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -20.0
1133181 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
1133493 [movies.py:apply_shifts():424] [29072] cubic interpolation
1133772 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -20.0
1133772 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
1134050 [movies.py:apply_shifts():424] [29072] cubic interpolation
1134249 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 92.0
1134250 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
1134251 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_4.tif'> shaped series axes do not match shape
1134255 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1134256 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1134257 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1134258 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1134259 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1134260 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1134261 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1134262 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1134263 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1134264 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1134264 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1134265 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1134266 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1134267 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1134267 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1134268 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1134268 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1158729 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
1158845 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 92.0
1158846 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
1158846 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_4.tif
<tifffile.TiffFile 'extracted_plane_4.tif'> shaped series axes do not match shape
1158850 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1158851 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\29217cfc-8575-4c35-b8b0-2fb29a4cb416\extracted_plane_4_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
1158852 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1158852 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1158853 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1158853 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1158854 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1158854 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1158854 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1158855 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1158856 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1158856 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1158857 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1158857 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1158858 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1158858 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1158859 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1158859 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1191011 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
1214055 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running f9e87c87-913e-4027-a3bd-83c4c7182493 with local backend
starting mc
1214175 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
1214284 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_5.tif'> shaped series axes do not match shape
1215324 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
1215324 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
1215324 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-41.0
<tifffile.TiffFile 'extracted_plane_5.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_5.tif'> shaped series axes do not match shape
1215822 [movies.py:apply_shifts():424] [29072] cubic interpolation
1216393 [movies.py:apply_shifts():424] [29072] cubic interpolation
1216914 [movies.py:apply_shifts():424] [29072] cubic interpolation
1217122 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 41.0
1217123 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
1217123 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_5.tif'> shaped series axes do not match shape
1217128 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1217129 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1217130 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1217131 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1217131 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1217132 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1217132 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1217133 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1217133 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1217134 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1217135 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1217135 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1217135 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1217136 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1217137 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1217137 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1217137 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1241513 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
1241642 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 41.0
1241642 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
1241643 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_5.tif
<tifffile.TiffFile 'extracted_plane_5.tif'> shaped series axes do not match shape
1241647 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1241649 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\f9e87c87-913e-4027-a3bd-83c4c7182493\extracted_plane_5_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
1241649 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1241650 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1241651 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1241651 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1241652 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1241652 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1241653 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1241653 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1241654 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1241654 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1241654 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1241655 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1241655 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1241656 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1241656 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1241657 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1273635 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
1296479 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running baf9fc6a-9159-46fd-a6b8-603d02c30c99 with local backend
starting mc
1296619 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
1296729 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_6.tif'> shaped series axes do not match shape
1297672 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
1297673 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
1297673 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-52.0
<tifffile.TiffFile 'extracted_plane_6.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_6.tif'> shaped series axes do not match shape
1298125 [movies.py:apply_shifts():424] [29072] cubic interpolation
1298731 [movies.py:apply_shifts():424] [29072] cubic interpolation
1299268 [movies.py:apply_shifts():424] [29072] cubic interpolation
1299473 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 52.0
1299474 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
1299474 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_6.tif'> shaped series axes do not match shape
1299479 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1299479 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1299479 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1299480 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1299481 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1299482 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1299482 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1299483 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1299483 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1299484 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1299484 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1299485 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1299485 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1299486 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1299487 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1299487 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1299487 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1324082 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
1324195 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 52.0
1324195 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
1324196 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_6.tif
<tifffile.TiffFile 'extracted_plane_6.tif'> shaped series axes do not match shape
1324200 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1324202 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\baf9fc6a-9159-46fd-a6b8-603d02c30c99\extracted_plane_6_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
1324202 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1324203 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1324203 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1324204 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1324204 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1324205 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1324205 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1324206 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1324206 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1324207 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1324207 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1324208 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1324208 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1324209 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1324210 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1324210 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1355974 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
1379091 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 7afd6d4c-7787-4e02-8dfc-fd0ce578164d with local backend
starting mc
1379252 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
1379357 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_7.tif'> shaped series axes do not match shape
1380396 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
1380397 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
1380398 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-48.0
<tifffile.TiffFile 'extracted_plane_7.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_7.tif'> shaped series axes do not match shape
1380965 [movies.py:apply_shifts():424] [29072] cubic interpolation
1381518 [movies.py:apply_shifts():424] [29072] cubic interpolation
1382087 [movies.py:apply_shifts():424] [29072] cubic interpolation
1382282 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 48.0
1382282 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
1382283 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_7.tif'> shaped series axes do not match shape
1382286 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1382287 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1382287 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1382288 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1382288 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1382289 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1382289 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1382289 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1382290 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1382290 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1382291 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1382291 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1382292 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1382292 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1382292 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1382293 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1382293 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1406895 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
1407019 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 48.0
1407020 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
1407021 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_7.tif
<tifffile.TiffFile 'extracted_plane_7.tif'> shaped series axes do not match shape
1407025 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1407026 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\7afd6d4c-7787-4e02-8dfc-fd0ce578164d\extracted_plane_7_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
1407027 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1407028 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1407028 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1407029 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1407030 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1407030 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1407031 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1407032 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1407033 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1407033 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1407034 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1407034 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1407035 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1407035 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1407036 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1407036 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1438968 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
1461240 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 28a3cd15-7671-4a5e-8744-9e8e73e35ee9 with local backend
starting mc
1461368 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
1461484 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_8.tif'> shaped series axes do not match shape
1463309 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
1463309 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
1463310 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-35.0
<tifffile.TiffFile 'extracted_plane_8.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_8.tif'> shaped series axes do not match shape
1464137 [movies.py:apply_shifts():424] [29072] cubic interpolation
1464711 [movies.py:apply_shifts():424] [29072] cubic interpolation
1465251 [movies.py:apply_shifts():424] [29072] cubic interpolation
1465465 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 35.0
1465465 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
1465466 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_8.tif'> shaped series axes do not match shape
1465470 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1465470 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1465471 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1465471 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1465472 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1465473 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1465473 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1465474 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1465474 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1465475 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1465475 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1465476 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1465476 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1465476 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1465477 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1465477 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1465477 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1489731 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
1489847 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 35.0
1489848 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
1489848 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_8.tif
<tifffile.TiffFile 'extracted_plane_8.tif'> shaped series axes do not match shape
1489852 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1489853 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\28a3cd15-7671-4a5e-8744-9e8e73e35ee9\extracted_plane_8_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
1489854 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1489854 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1489855 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1489855 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1489856 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1489856 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1489857 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1489857 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1489858 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1489858 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1489859 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1489859 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1489860 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1489860 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1489861 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1489861 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1522112 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
1545166 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 379d8c22-52c6-4a6a-ae8e-69ccd1d5c5ed with local backend
starting mc
1545308 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
1545407 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_9.tif'> shaped series axes do not match shape
1546796 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
1546797 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
1546797 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-37.0
<tifffile.TiffFile 'extracted_plane_9.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_9.tif'> shaped series axes do not match shape
1547263 [movies.py:apply_shifts():424] [29072] cubic interpolation
1547855 [movies.py:apply_shifts():424] [29072] cubic interpolation
1548472 [movies.py:apply_shifts():424] [29072] cubic interpolation
1548680 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 37.0
1548680 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
1548681 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_9.tif'> shaped series axes do not match shape
1548687 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1548688 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1548688 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1548689 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1548689 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1548690 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1548691 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1548691 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1548692 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1548693 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1548693 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1548694 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1548695 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1548695 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1548696 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1548697 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1548697 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1573056 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
1573168 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 37.0
1573168 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
1573169 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_9.tif
<tifffile.TiffFile 'extracted_plane_9.tif'> shaped series axes do not match shape
1573173 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1573174 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\379d8c22-52c6-4a6a-ae8e-69ccd1d5c5ed\extracted_plane_9_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
1573175 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1573175 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1573175 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1573176 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1573177 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1573177 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1573178 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1573178 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1573179 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1573179 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1573180 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1573180 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1573180 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1573181 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1573181 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1573182 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1605226 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
1628331 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 679fe640-ee6c-480c-bc71-e941000b8851 with local backend
starting mc
1628474 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
1628575 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_10.tif'> shaped series axes do not match shape
1629520 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
1629521 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
1629521 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-40.0
<tifffile.TiffFile 'extracted_plane_10.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_10.tif'> shaped series axes do not match shape
1629989 [movies.py:apply_shifts():424] [29072] cubic interpolation
1630539 [movies.py:apply_shifts():424] [29072] cubic interpolation
1631105 [movies.py:apply_shifts():424] [29072] cubic interpolation
1631320 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 40.0
1631321 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
1631322 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_10.tif'> shaped series axes do not match shape
1631326 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1631326 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1631327 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1631327 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1631328 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1631328 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1631329 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1631329 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1631330 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1631330 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1631331 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1631331 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1631332 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1631332 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1631332 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1631333 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1631333 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1654914 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
1655027 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 40.0
1655027 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
1655028 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_10.tif
<tifffile.TiffFile 'extracted_plane_10.tif'> shaped series axes do not match shape
1655032 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1655033 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\679fe640-ee6c-480c-bc71-e941000b8851\extracted_plane_10_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
1655034 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1655034 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1655034 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1655035 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1655035 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1655036 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1655037 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1655038 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1655039 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1655039 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1655040 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1655041 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1655042 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1655042 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1655043 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1655043 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1687403 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
1710981 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running d5f2446a-0f42-472a-b969-735c7980b96b with local backend
starting mc
1711130 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
1711230 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_11.tif'> shaped series axes do not match shape
1712173 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
1712173 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
1712174 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-47.0
<tifffile.TiffFile 'extracted_plane_11.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_11.tif'> shaped series axes do not match shape
1712682 [movies.py:apply_shifts():424] [29072] cubic interpolation
1713248 [movies.py:apply_shifts():424] [29072] cubic interpolation
1713837 [movies.py:apply_shifts():424] [29072] cubic interpolation
1714056 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 47.0
1714056 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
1714057 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_11.tif'> shaped series axes do not match shape
1714062 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1714062 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1714063 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1714063 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1714064 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1714064 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1714065 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1714066 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1714066 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1714067 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1714068 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1714069 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1714069 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1714070 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1714070 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1714071 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1714071 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1738361 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
1738491 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 47.0
1738491 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
1738492 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_11.tif
<tifffile.TiffFile 'extracted_plane_11.tif'> shaped series axes do not match shape
1738496 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1738498 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\d5f2446a-0f42-472a-b969-735c7980b96b\extracted_plane_11_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
1738498 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1738498 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1738499 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1738500 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1738500 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1738501 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1738501 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1738502 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1738502 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1738503 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1738503 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1738504 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1738504 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1738505 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1738505 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1738505 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1770224 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
1793345 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 888fa033-522f-4fec-bbd6-607f93fffc11 with local backend
starting mc
1793465 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
1793565 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_12.tif'> shaped series axes do not match shape
1794446 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
1794446 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
1794447 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-57.0
<tifffile.TiffFile 'extracted_plane_12.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_12.tif'> shaped series axes do not match shape
1794967 [movies.py:apply_shifts():424] [29072] cubic interpolation
1795533 [movies.py:apply_shifts():424] [29072] cubic interpolation
1796117 [movies.py:apply_shifts():424] [29072] cubic interpolation
1796340 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 57.0
1796340 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
1796341 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_12.tif'> shaped series axes do not match shape
1796345 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1796346 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1796347 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1796347 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1796348 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1796348 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1796349 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1796349 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1796350 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1796350 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1796350 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1796351 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1796351 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1796352 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1796352 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1796352 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1796353 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1820291 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
1820411 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 57.0
1820412 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
1820413 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_12.tif
<tifffile.TiffFile 'extracted_plane_12.tif'> shaped series axes do not match shape
1820418 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1820419 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\888fa033-522f-4fec-bbd6-607f93fffc11\extracted_plane_12_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
1820419 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1820420 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1820420 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1820421 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1820421 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1820422 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1820422 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1820423 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1820424 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1820424 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1820425 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1820426 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1820426 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1820427 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1820427 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1820428 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1853209 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
1876196 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 9c53c1bc-e865-4977-89da-1c1bff7d4d21 with local backend
starting mc
1876340 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
1876457 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_13.tif'> shaped series axes do not match shape
1877364 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
1877364 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
1877365 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-53.0
<tifffile.TiffFile 'extracted_plane_13.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_13.tif'> shaped series axes do not match shape
1877620 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -5.0
1877620 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
1877906 [movies.py:apply_shifts():424] [29072] cubic interpolation
1878201 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -5.0
1878201 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
1878482 [movies.py:apply_shifts():424] [29072] cubic interpolation
1878750 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -5.0
1878750 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
1879024 [movies.py:apply_shifts():424] [29072] cubic interpolation
1879212 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 53.0
1879213 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
1879214 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_13.tif'> shaped series axes do not match shape
1879219 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1879219 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1879220 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1879220 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1879220 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1879221 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1879221 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1879222 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1879223 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1879223 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1879223 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1879224 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1879224 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1879225 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1879225 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1879226 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1879226 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1903495 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
1903622 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 53.0
1903623 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
1903624 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_13.tif
<tifffile.TiffFile 'extracted_plane_13.tif'> shaped series axes do not match shape
1903628 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1903630 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\9c53c1bc-e865-4977-89da-1c1bff7d4d21\extracted_plane_13_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
1903630 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1903630 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1903631 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1903632 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1903633 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1903633 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1903633 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1903634 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1903635 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1903635 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1903636 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1903636 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1903637 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1903637 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1903638 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1903638 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1935614 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
1958160 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 6f3101c4-9792-497a-939f-5a4780848a0d with local backend
starting mc
1958282 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
1958408 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_14.tif'> shaped series axes do not match shape
1959336 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
1959336 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
1959337 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-56.0
<tifffile.TiffFile 'extracted_plane_14.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_14.tif'> shaped series axes do not match shape
1959604 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -11.0
1959605 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
1959884 [movies.py:apply_shifts():424] [29072] cubic interpolation
1960163 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -11.0
1960163 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
1960434 [movies.py:apply_shifts():424] [29072] cubic interpolation
1960695 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -11.0
1960695 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
1960983 [movies.py:apply_shifts():424] [29072] cubic interpolation
1961170 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 56.0
1961170 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
1961171 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_14.tif'> shaped series axes do not match shape
1961175 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1961176 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1961176 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1961177 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1961177 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1961178 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1961178 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1961179 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1961179 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1961180 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1961181 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1961181 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1961182 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1961182 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1961183 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1961183 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1961184 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
1985861 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
1985989 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 56.0
1985989 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
1985991 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_14.tif
<tifffile.TiffFile 'extracted_plane_14.tif'> shaped series axes do not match shape
1985996 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
1985997 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\6f3101c4-9792-497a-939f-5a4780848a0d\extracted_plane_14_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
1985998 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
1985998 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
1985999 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
1985999 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
1986000 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
1986000 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
1986001 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
1986001 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
1986002 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
1986002 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
1986003 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
1986004 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
1986004 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
1986005 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
1986005 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
1986005 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2017873 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
2040584 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 41ed61cb-4b3e-4117-9db6-e054b1d8c697 with local backend
starting mc
2040726 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
2040841 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_15.tif'> shaped series axes do not match shape
2041726 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
2041727 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
2041727 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-60.0
<tifffile.TiffFile 'extracted_plane_15.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_15.tif'> shaped series axes do not match shape
2041977 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -15.0
2041977 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2042241 [movies.py:apply_shifts():424] [29072] cubic interpolation
2042548 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -15.0
2042549 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2042818 [movies.py:apply_shifts():424] [29072] cubic interpolation
2043103 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -15.0
2043103 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2043380 [movies.py:apply_shifts():424] [29072] cubic interpolation
2043571 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 60.0
2043571 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
2043572 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_15.tif'> shaped series axes do not match shape
2043577 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2043578 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2043578 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2043579 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2043579 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2043580 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2043580 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2043581 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2043582 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2043582 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2043583 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2043583 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2043584 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2043585 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2043585 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2043586 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2043586 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2067548 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
2067660 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 60.0
2067660 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
2067661 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_15.tif
<tifffile.TiffFile 'extracted_plane_15.tif'> shaped series axes do not match shape
2067665 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2067666 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\41ed61cb-4b3e-4117-9db6-e054b1d8c697\extracted_plane_15_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
2067667 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2067667 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2067668 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2067668 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2067669 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2067669 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2067670 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2067670 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2067671 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2067671 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2067672 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2067672 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2067673 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2067673 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2067674 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2067674 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2099924 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
2123161 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 625b34c3-eae3-4ad8-8015-5cc48122c7ec with local backend
starting mc
2123281 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
2123383 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_16.tif'> shaped series axes do not match shape
2124381 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
2124382 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
2124382 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-83.0
<tifffile.TiffFile 'extracted_plane_16.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_16.tif'> shaped series axes do not match shape
2124626 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -19.0
2124627 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2124897 [movies.py:apply_shifts():424] [29072] cubic interpolation
2125151 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -19.0
2125152 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2125441 [movies.py:apply_shifts():424] [29072] cubic interpolation
2125685 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -19.0
2125686 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2125963 [movies.py:apply_shifts():424] [29072] cubic interpolation
2126154 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 83.0
2126155 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
2126156 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_16.tif'> shaped series axes do not match shape
2126160 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2126161 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2126162 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2126162 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2126163 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2126163 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2126164 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2126164 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2126165 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2126166 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2126166 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2126167 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2126168 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2126168 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2126169 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2126169 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2126170 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2150468 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
2150582 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 83.0
2150583 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
2150583 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_16.tif
<tifffile.TiffFile 'extracted_plane_16.tif'> shaped series axes do not match shape
2150588 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2150589 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\625b34c3-eae3-4ad8-8015-5cc48122c7ec\extracted_plane_16_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
2150590 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2150590 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2150591 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2150591 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2150591 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2150592 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2150593 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2150593 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2150594 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2150594 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2150595 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2150596 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2150596 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2150597 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2150597 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2150598 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2182036 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
2205274 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running e6a54884-a8a8-447b-be78-70957a62f161 with local backend
starting mc
2205425 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
2205550 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_17.tif'> shaped series axes do not match shape
2206462 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
2206463 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
2206463 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-71.0
<tifffile.TiffFile 'extracted_plane_17.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_17.tif'> shaped series axes do not match shape
2206674 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -23.0
2206675 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2206935 [movies.py:apply_shifts():424] [29072] cubic interpolation
2207188 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -23.0
2207189 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2207473 [movies.py:apply_shifts():424] [29072] cubic interpolation
2207733 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -23.0
2207733 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2207998 [movies.py:apply_shifts():424] [29072] cubic interpolation
2208183 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 71.0
2208183 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
2208184 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_17.tif'> shaped series axes do not match shape
2208192 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2208192 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2208193 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2208194 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2208194 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2208195 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2208195 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2208196 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2208197 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2208197 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2208198 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2208199 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2208199 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2208200 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2208201 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2208201 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2208202 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2232723 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
2232850 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 71.0
2232851 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
2232851 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_17.tif
<tifffile.TiffFile 'extracted_plane_17.tif'> shaped series axes do not match shape
2232855 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2232856 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\e6a54884-a8a8-447b-be78-70957a62f161\extracted_plane_17_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
2232857 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2232857 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2232858 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2232858 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2232859 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2232859 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2232860 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2232860 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2232861 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2232861 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2232862 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2232863 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2232863 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2232864 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2232864 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2232864 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2265437 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
2288831 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running c21edffc-96ae-4103-b0e7-9ae4af82a6a7 with local backend
starting mc
2288980 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
2289091 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_18.tif'> shaped series axes do not match shape
2290054 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
2290055 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
2290055 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-110.0
<tifffile.TiffFile 'extracted_plane_18.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_18.tif'> shaped series axes do not match shape
2290622 [movies.py:apply_shifts():424] [29072] cubic interpolation
2291151 [movies.py:apply_shifts():424] [29072] cubic interpolation
2291691 [movies.py:apply_shifts():424] [29072] cubic interpolation
2291883 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 110.0
2291884 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
2291885 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_18.tif'> shaped series axes do not match shape
2291889 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2291889 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2291890 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2291891 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2291891 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2291892 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2291892 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2291893 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2291893 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2291894 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2291895 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2291895 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2291897 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2291898 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2291898 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2291899 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2291899 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2316231 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
2316372 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 110.0
2316373 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
2316373 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_18.tif
<tifffile.TiffFile 'extracted_plane_18.tif'> shaped series axes do not match shape
2316377 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2316378 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\c21edffc-96ae-4103-b0e7-9ae4af82a6a7\extracted_plane_18_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
2316379 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2316379 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2316380 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2316380 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2316381 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2316381 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2316382 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2316382 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2316383 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2316383 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2316383 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2316384 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2316385 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2316385 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2316386 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2316386 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2348106 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
2370675 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running bbcf4810-f29e-4fde-a425-fa81a34e7c14 with local backend
starting mc
2370815 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
2370931 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_19.tif'> shaped series axes do not match shape
2371885 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
2371886 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
2371886 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-73.0
<tifffile.TiffFile 'extracted_plane_19.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_19.tif'> shaped series axes do not match shape
2372445 [movies.py:apply_shifts():424] [29072] cubic interpolation
2373007 [movies.py:apply_shifts():424] [29072] cubic interpolation
2373590 [movies.py:apply_shifts():424] [29072] cubic interpolation
2373775 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 73.0
2373775 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
2373776 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_19.tif'> shaped series axes do not match shape
2373780 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2373781 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2373781 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2373782 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2373782 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2373783 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2373784 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2373784 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2373785 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2373786 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2373786 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2373787 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2373788 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2373788 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2373789 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2373789 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2373790 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2398027 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
2398154 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 73.0
2398155 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
2398155 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_19.tif
<tifffile.TiffFile 'extracted_plane_19.tif'> shaped series axes do not match shape
2398159 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2398160 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\bbcf4810-f29e-4fde-a425-fa81a34e7c14\extracted_plane_19_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
2398161 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2398161 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2398162 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2398162 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2398162 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2398163 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2398164 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2398164 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2398165 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2398165 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2398166 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2398166 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2398167 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2398167 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2398168 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2398168 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2430417 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
2453373 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 3f1399d9-951f-46b7-8424-8a5019984015 with local backend
starting mc
2453506 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
2453606 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_20.tif'> shaped series axes do not match shape
2454696 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
2454697 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
2454698 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-71.0
<tifffile.TiffFile 'extracted_plane_20.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_20.tif'> shaped series axes do not match shape
2455208 [movies.py:apply_shifts():424] [29072] cubic interpolation
2455779 [movies.py:apply_shifts():424] [29072] cubic interpolation
2456327 [movies.py:apply_shifts():424] [29072] cubic interpolation
2456583 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 71.0
2456583 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
2456584 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_20.tif'> shaped series axes do not match shape
2456588 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2456589 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2456589 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2456590 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2456590 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2456591 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2456591 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2456592 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2456592 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2456593 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2456593 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2456594 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2456594 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2456594 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2456595 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2456596 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2456596 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2482221 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
2482333 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 71.0
2482334 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
2482334 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_20.tif
<tifffile.TiffFile 'extracted_plane_20.tif'> shaped series axes do not match shape
2482339 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2482341 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\3f1399d9-951f-46b7-8424-8a5019984015\extracted_plane_20_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
2482341 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2482342 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2482342 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2482342 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2482343 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2482344 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2482344 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2482345 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2482345 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2482346 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2482346 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2482347 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2482348 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2482348 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2482348 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2482348 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2514365 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
2536999 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 666389a4-64ae-48e1-bcb0-381a48cff336 with local backend
starting mc
2537150 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
2537279 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_21.tif'> shaped series axes do not match shape
2538144 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
2538145 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
2538145 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-79.0
<tifffile.TiffFile 'extracted_plane_21.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_21.tif'> shaped series axes do not match shape
2538372 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -9.0
2538373 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2538707 [movies.py:apply_shifts():424] [29072] cubic interpolation
2539021 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -9.0
2539022 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2539354 [movies.py:apply_shifts():424] [29072] cubic interpolation
2539612 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -9.0
2539613 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2539911 [movies.py:apply_shifts():424] [29072] cubic interpolation
2540123 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 79.0
2540123 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
2540124 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_21.tif'> shaped series axes do not match shape
2540128 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2540128 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2540129 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2540130 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2540130 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2540131 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2540131 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2540132 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2540132 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2540132 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2540133 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2540134 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2540134 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2540135 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2540135 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2540136 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2540136 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2564196 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
2564317 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 79.0
2564318 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
2564319 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_21.tif
<tifffile.TiffFile 'extracted_plane_21.tif'> shaped series axes do not match shape
2564323 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2564325 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\666389a4-64ae-48e1-bcb0-381a48cff336\extracted_plane_21_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
2564325 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2564326 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2564326 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2564326 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2564327 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2564328 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2564328 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2564329 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2564329 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2564330 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2564330 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2564331 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2564331 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2564332 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2564332 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2564333 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2596553 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
2619507 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 09e7e82e-3365-409d-b961-33e51d022ba5 with local backend
starting mc
2619656 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
2619765 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_22.tif'> shaped series axes do not match shape
2621226 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
2621226 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
2621227 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-84.0
<tifffile.TiffFile 'extracted_plane_22.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_22.tif'> shaped series axes do not match shape
2621516 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -15.0
2621517 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2621827 [movies.py:apply_shifts():424] [29072] cubic interpolation
2622184 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -15.0
2622185 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2622489 [movies.py:apply_shifts():424] [29072] cubic interpolation
2622797 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -15.0
2622798 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2623058 [movies.py:apply_shifts():424] [29072] cubic interpolation
2623250 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 84.0
2623250 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
2623251 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_22.tif'> shaped series axes do not match shape
2623255 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2623256 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2623256 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2623257 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2623258 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2623258 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2623259 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2623259 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2623260 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2623261 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2623261 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2623262 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2623262 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2623263 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2623264 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2623264 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2623265 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2647781 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
2647895 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 84.0
2647895 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
2647896 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_22.tif
<tifffile.TiffFile 'extracted_plane_22.tif'> shaped series axes do not match shape
2647900 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2647901 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\09e7e82e-3365-409d-b961-33e51d022ba5\extracted_plane_22_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
2647901 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2647902 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2647902 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2647903 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2647903 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2647904 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2647904 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2647905 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2647905 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2647906 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2647906 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2647907 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2647908 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2647908 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2647908 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2647909 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2679862 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
2703103 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 450d0648-35c0-4528-b199-c448b4b3de7a with local backend
starting mc
2703247 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
2703362 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_23.tif'> shaped series axes do not match shape
2704265 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
2704265 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
2704266 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-91.0
<tifffile.TiffFile 'extracted_plane_23.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_23.tif'> shaped series axes do not match shape
2704467 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -18.0
2704467 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2704729 [movies.py:apply_shifts():424] [29072] cubic interpolation
2704982 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -18.0
2704982 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2705258 [movies.py:apply_shifts():424] [29072] cubic interpolation
2705502 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -18.0
2705503 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2705787 [movies.py:apply_shifts():424] [29072] cubic interpolation
2705984 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 91.0
2705985 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
2705986 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_23.tif'> shaped series axes do not match shape
2705991 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2705992 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2705993 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2705993 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2705994 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2705994 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2705995 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2705995 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2705996 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2705996 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2705997 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2705998 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2705998 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2705999 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2705999 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2705999 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2706000 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2730186 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
2730305 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 91.0
2730305 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
2730306 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_23.tif
<tifffile.TiffFile 'extracted_plane_23.tif'> shaped series axes do not match shape
2730311 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2730312 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\450d0648-35c0-4528-b199-c448b4b3de7a\extracted_plane_23_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
2730312 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2730313 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2730313 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2730314 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2730314 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2730315 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2730316 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2730316 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2730317 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2730317 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2730318 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2730318 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2730319 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2730319 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2730319 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2730320 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2762200 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
2785269 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 31b2befb-4833-4a1e-83ef-4c177244bd33 with local backend
starting mc
2785420 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
2785522 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_24.tif'> shaped series axes do not match shape
2786580 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
2786580 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
2786580 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-101.0
<tifffile.TiffFile 'extracted_plane_24.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_24.tif'> shaped series axes do not match shape
2786790 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -23.0
2786790 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2787054 [movies.py:apply_shifts():424] [29072] cubic interpolation
2787346 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -23.0
2787346 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2787634 [movies.py:apply_shifts():424] [29072] cubic interpolation
2787900 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -23.0
2787900 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2788156 [movies.py:apply_shifts():424] [29072] cubic interpolation
2788347 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 101.0
2788347 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
2788348 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_24.tif'> shaped series axes do not match shape
2788352 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2788353 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2788353 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2788354 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2788354 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2788355 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2788356 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2788356 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2788357 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2788357 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2788358 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2788359 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2788360 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2788360 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2788361 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2788361 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2788361 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2812816 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
2812932 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 101.0
2812932 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
2812933 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_24.tif
<tifffile.TiffFile 'extracted_plane_24.tif'> shaped series axes do not match shape
2812937 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2812938 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\31b2befb-4833-4a1e-83ef-4c177244bd33\extracted_plane_24_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
2812938 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2812939 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2812939 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2812940 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2812940 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2812940 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2812941 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2812941 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2812942 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2812942 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2812943 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2812943 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2812944 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2812944 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2812945 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2812945 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2844894 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
2868347 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running b60dc323-4e70-4c7f-88f8-f7255e9252c5 with local backend
starting mc
2868466 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
2868581 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_25.tif'> shaped series axes do not match shape
2869422 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
2869422 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
2869422 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-89.0
<tifffile.TiffFile 'extracted_plane_25.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_25.tif'> shaped series axes do not match shape
2869654 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -22.0
2869655 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2869943 [movies.py:apply_shifts():424] [29072] cubic interpolation
2870230 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -22.0
2870230 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2870543 [movies.py:apply_shifts():424] [29072] cubic interpolation
2870821 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -22.0
2870821 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2871093 [movies.py:apply_shifts():424] [29072] cubic interpolation
2871313 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 89.0
2871314 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
2871314 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_25.tif'> shaped series axes do not match shape
2871319 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2871320 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2871320 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2871321 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2871321 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2871322 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2871323 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2871323 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2871323 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2871324 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2871324 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2871325 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2871325 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2871326 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2871327 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2871327 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2871328 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2895528 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
2895660 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 89.0
2895661 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
2895662 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_25.tif
<tifffile.TiffFile 'extracted_plane_25.tif'> shaped series axes do not match shape
2895667 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2895669 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\b60dc323-4e70-4c7f-88f8-f7255e9252c5\extracted_plane_25_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
2895669 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2895670 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2895671 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2895671 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2895672 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2895672 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2895673 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2895673 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2895674 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2895675 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2895675 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2895676 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2895677 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2895677 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2895678 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2895678 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2928967 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
2952107 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 6edd066c-6801-4c96-b71e-a34f3f446514 with local backend
starting mc
2952254 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
2952373 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_26.tif'> shaped series axes do not match shape
2953222 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
2953223 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
2953224 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-86.0
<tifffile.TiffFile 'extracted_plane_26.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_26.tif'> shaped series axes do not match shape
2953443 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -25.0
2953444 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2953739 [movies.py:apply_shifts():424] [29072] cubic interpolation
2954017 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -25.0
2954018 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2954329 [movies.py:apply_shifts():424] [29072] cubic interpolation
2954594 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -25.0
2954594 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
2954864 [movies.py:apply_shifts():424] [29072] cubic interpolation
2955065 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 86.0
2955065 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
2955066 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_26.tif'> shaped series axes do not match shape
2955070 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2955071 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2955071 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2955072 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2955072 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2955073 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2955074 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2955075 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2955075 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2955076 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2955076 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2955077 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2955077 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2955077 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2955078 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2955078 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2955078 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
2979647 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
2979774 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 86.0
2979775 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
2979775 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_26.tif
<tifffile.TiffFile 'extracted_plane_26.tif'> shaped series axes do not match shape
2979779 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
2979780 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\6edd066c-6801-4c96-b71e-a34f3f446514\extracted_plane_26_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
2979781 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
2979781 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
2979781 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
2979782 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
2979782 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
2979783 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
2979783 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
2979783 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
2979784 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
2979784 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
2979785 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
2979785 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
2979786 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
2979786 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
2979786 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
2979787 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3011031 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
3033160 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running df55466a-8e2e-44d7-93d6-bc2ba0c5ab01 with local backend
starting mc
3033318 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
3033429 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_27.tif'> shaped series axes do not match shape
3034363 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
3034364 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
3034364 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-102.0
<tifffile.TiffFile 'extracted_plane_27.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_27.tif'> shaped series axes do not match shape
3034647 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -27.0
3034647 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
3034939 [movies.py:apply_shifts():424] [29072] cubic interpolation
3035259 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -27.0
3035260 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
3035571 [movies.py:apply_shifts():424] [29072] cubic interpolation
3035902 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -27.0
3035903 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
3036204 [movies.py:apply_shifts():424] [29072] cubic interpolation
3036436 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 102.0
3036436 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
3036437 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_27.tif'> shaped series axes do not match shape
3036440 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3036441 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3036441 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3036442 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3036442 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3036443 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3036443 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3036444 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3036444 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3036445 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3036445 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3036445 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3036446 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3036446 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3036447 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3036447 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3036448 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3060518 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
3060639 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 102.0
3060640 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
3060640 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_27.tif
<tifffile.TiffFile 'extracted_plane_27.tif'> shaped series axes do not match shape
3060645 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3060646 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\df55466a-8e2e-44d7-93d6-bc2ba0c5ab01\extracted_plane_27_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
3060647 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3060647 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3060648 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3060648 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3060649 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3060649 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3060650 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3060650 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3060651 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3060652 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3060652 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3060653 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3060653 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3060654 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3060654 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3060654 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3092245 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
3115089 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 2f2fa5da-3177-42ac-967c-240a46091e79 with local backend
starting mc
3115254 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
3115384 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_28.tif'> shaped series axes do not match shape
3116388 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
3116389 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
3116389 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-90.0
<tifffile.TiffFile 'extracted_plane_28.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_28.tif'> shaped series axes do not match shape
3116670 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -26.0
3116670 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
3116929 [movies.py:apply_shifts():424] [29072] cubic interpolation
3117242 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -26.0
3117243 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
3117506 [movies.py:apply_shifts():424] [29072] cubic interpolation
3117807 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -26.0
3117807 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
3118055 [movies.py:apply_shifts():424] [29072] cubic interpolation
3118238 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 90.0
3118238 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
3118239 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_28.tif'> shaped series axes do not match shape
3118243 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3118244 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3118244 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3118245 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3118245 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3118246 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3118246 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3118246 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3118247 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3118247 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3118248 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3118248 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3118250 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3118251 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3118251 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3118252 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3118252 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3142444 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
3142575 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 90.0
3142576 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
3142576 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_28.tif
<tifffile.TiffFile 'extracted_plane_28.tif'> shaped series axes do not match shape
3142580 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3142582 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\2f2fa5da-3177-42ac-967c-240a46091e79\extracted_plane_28_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
3142582 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3142582 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3142583 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3142583 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3142584 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3142585 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3142585 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3142586 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3142586 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3142587 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3142587 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3142587 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3142588 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3142588 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3142589 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3142589 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3174859 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
3197626 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 18c557b7-916c-4ba8-bf46-063123d3c29b with local backend
starting mc
3197779 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
3197904 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_2.tif'> shaped series axes do not match shape
3198850 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
3198850 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
3198851 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-45.0
<tifffile.TiffFile 'extracted_plane_2.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_2.tif'> shaped series axes do not match shape
3199408 [movies.py:apply_shifts():424] [29072] cubic interpolation
3200023 [movies.py:apply_shifts():424] [29072] cubic interpolation
3200638 [movies.py:apply_shifts():424] [29072] cubic interpolation
3200839 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 45.0
3200839 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
3200840 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_2.tif'> shaped series axes do not match shape
3200844 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3200845 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3200845 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3200846 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3200846 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3200847 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3200847 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3200848 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3200848 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3200848 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3200849 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3200850 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3200850 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3200851 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3200851 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3200852 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3200852 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3224855 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
3224975 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 45.0
3224976 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
3224977 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_2.tif
<tifffile.TiffFile 'extracted_plane_2.tif'> shaped series axes do not match shape
3224981 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3224982 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\18c557b7-916c-4ba8-bf46-063123d3c29b\extracted_plane_2_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
3224982 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3224983 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3224983 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3224984 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3224984 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3224985 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3224985 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3224986 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3224986 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3224987 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3224987 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3224988 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3224988 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3224989 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3224989 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3224990 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3256851 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
3279211 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running d70524da-a75c-46b7-9acc-3641c13dddf2 with local backend
starting mc
3279350 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
3279463 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_3.tif'> shaped series axes do not match shape
3280474 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
3280475 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
3280476 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-66.0
<tifffile.TiffFile 'extracted_plane_3.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_3.tif'> shaped series axes do not match shape
3281010 [movies.py:apply_shifts():424] [29072] cubic interpolation
3281542 [movies.py:apply_shifts():424] [29072] cubic interpolation
3282058 [movies.py:apply_shifts():424] [29072] cubic interpolation
3282265 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 66.0
3282266 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
3282267 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_3.tif'> shaped series axes do not match shape
3282272 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3282272 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3282273 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3282274 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3282274 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3282275 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3282276 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3282276 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3282277 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3282277 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3282278 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3282278 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3282279 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3282279 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3282280 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3282280 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3282281 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3306414 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
3306541 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 66.0
3306541 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
3306542 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_3.tif
<tifffile.TiffFile 'extracted_plane_3.tif'> shaped series axes do not match shape
3306546 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3306547 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\d70524da-a75c-46b7-9acc-3641c13dddf2\extracted_plane_3_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
3306547 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3306548 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3306549 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3306549 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3306550 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3306550 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3306550 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3306551 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3306551 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3306552 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3306552 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3306553 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3306553 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3306554 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3306554 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3306555 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3338389 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
3361374 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 1fde15f9-7508-4151-a3f7-abbfb049de5e with local backend
starting mc
3361494 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
3361617 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_4.tif'> shaped series axes do not match shape
3362644 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
3362645 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
3362645 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-92.0
<tifffile.TiffFile 'extracted_plane_4.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_4.tif'> shaped series axes do not match shape
3362881 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -20.0
3362881 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
3363162 [movies.py:apply_shifts():424] [29072] cubic interpolation
3363454 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -20.0
3363455 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
3363776 [movies.py:apply_shifts():424] [29072] cubic interpolation
3364043 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -20.0
3364044 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
3364341 [movies.py:apply_shifts():424] [29072] cubic interpolation
3364569 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 92.0
3364570 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
3364570 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_4.tif'> shaped series axes do not match shape
3364574 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3364575 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3364575 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3364576 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3364576 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3364577 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3364577 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3364578 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3364578 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3364579 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3364579 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3364580 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3364580 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3364580 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3364581 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3364582 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3364582 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3388231 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
3388349 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 92.0
3388350 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
3388351 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_4.tif
<tifffile.TiffFile 'extracted_plane_4.tif'> shaped series axes do not match shape
3388355 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3388357 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\1fde15f9-7508-4151-a3f7-abbfb049de5e\extracted_plane_4_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
3388357 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3388358 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3388358 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3388359 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3388359 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3388360 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3388360 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3388361 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3388361 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3388362 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3388363 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3388363 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3388364 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3388364 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3388365 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3388365 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3419835 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
3442218 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 835e0530-9996-4f09-b468-4c711ab1a2be with local backend
starting mc
3442364 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
3442478 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_5.tif'> shaped series axes do not match shape
3443465 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
3443465 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
3443465 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-41.0
<tifffile.TiffFile 'extracted_plane_5.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_5.tif'> shaped series axes do not match shape
3443966 [movies.py:apply_shifts():424] [29072] cubic interpolation
3444547 [movies.py:apply_shifts():424] [29072] cubic interpolation
3445109 [movies.py:apply_shifts():424] [29072] cubic interpolation
3445314 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 41.0
3445314 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
3445315 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_5.tif'> shaped series axes do not match shape
3445319 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3445319 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3445320 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3445321 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3445321 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3445322 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3445322 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3445323 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3445323 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3445324 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3445324 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3445325 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3445325 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3445325 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3445326 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3445327 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3445327 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3469511 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
3469639 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 41.0
3469640 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
3469640 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_5.tif
<tifffile.TiffFile 'extracted_plane_5.tif'> shaped series axes do not match shape
3469644 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3469646 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\835e0530-9996-4f09-b468-4c711ab1a2be\extracted_plane_5_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
3469646 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3469647 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3469647 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3469648 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3469648 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3469649 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3469649 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3469650 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3469651 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3469651 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3469652 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3469652 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3469653 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3469653 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3469654 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3469654 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3501253 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
3523211 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 9ab637ab-1599-42b0-8a8f-bb916078334f with local backend
starting mc
3523355 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
3523483 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_6.tif'> shaped series axes do not match shape
3524403 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
3524404 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
3524404 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-52.0
<tifffile.TiffFile 'extracted_plane_6.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_6.tif'> shaped series axes do not match shape
3524900 [movies.py:apply_shifts():424] [29072] cubic interpolation
3525416 [movies.py:apply_shifts():424] [29072] cubic interpolation
3525990 [movies.py:apply_shifts():424] [29072] cubic interpolation
3526246 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 52.0
3526247 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
3526247 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_6.tif'> shaped series axes do not match shape
3526251 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3526252 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3526252 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3526253 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3526253 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3526254 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3526254 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3526254 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3526255 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3526255 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3526256 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3526256 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3526257 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3526257 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3526258 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3526258 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3526258 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3550442 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
3550572 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 52.0
3550572 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
3550573 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_6.tif
<tifffile.TiffFile 'extracted_plane_6.tif'> shaped series axes do not match shape
3550577 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3550578 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\9ab637ab-1599-42b0-8a8f-bb916078334f\extracted_plane_6_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
3550579 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3550579 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3550580 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3550580 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3550581 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3550581 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3550581 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3550582 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3550582 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3550583 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3550583 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3550584 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3550585 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3550585 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3550586 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3550586 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3583150 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
3606183 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running bbc4d279-ff99-47ce-b19a-573caca031a4 with local backend
starting mc
3606313 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
3606431 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_7.tif'> shaped series axes do not match shape
3607288 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
3607289 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
3607289 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-48.0
<tifffile.TiffFile 'extracted_plane_7.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_7.tif'> shaped series axes do not match shape
3607781 [movies.py:apply_shifts():424] [29072] cubic interpolation
3608328 [movies.py:apply_shifts():424] [29072] cubic interpolation
3608885 [movies.py:apply_shifts():424] [29072] cubic interpolation
3609082 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 48.0
3609083 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
3609083 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_7.tif'> shaped series axes do not match shape
3609088 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3609088 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3609089 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3609089 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3609090 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3609091 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3609091 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3609092 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3609092 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3609093 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3609093 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3609094 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3609094 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3609095 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3609095 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3609096 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3609096 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3633504 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
3633616 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 48.0
3633617 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
3633617 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_7.tif
<tifffile.TiffFile 'extracted_plane_7.tif'> shaped series axes do not match shape
3633621 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3633622 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\bbc4d279-ff99-47ce-b19a-573caca031a4\extracted_plane_7_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
3633623 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3633623 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3633624 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3633624 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3633625 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3633625 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3633626 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3633626 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3633627 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3633627 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3633628 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3633628 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3633629 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3633629 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3633629 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3633630 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3665227 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
3687952 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running cca66748-953a-40e6-b632-93504557308e with local backend
starting mc
3688074 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
3688196 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_8.tif'> shaped series axes do not match shape
3689075 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
3689075 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
3689076 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-35.0
<tifffile.TiffFile 'extracted_plane_8.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_8.tif'> shaped series axes do not match shape
3689635 [movies.py:apply_shifts():424] [29072] cubic interpolation
3690214 [movies.py:apply_shifts():424] [29072] cubic interpolation
3690755 [movies.py:apply_shifts():424] [29072] cubic interpolation
3690959 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 35.0
3690959 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
3690961 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_8.tif'> shaped series axes do not match shape
3690965 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3690965 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3690966 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3690967 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3690968 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3690968 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3690968 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3690969 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3690970 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3690970 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3690971 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3690972 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3690972 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3690973 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3690973 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3690974 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3690974 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3714872 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
3714984 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 35.0
3714985 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
3714986 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_8.tif
<tifffile.TiffFile 'extracted_plane_8.tif'> shaped series axes do not match shape
3714990 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3714992 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\cca66748-953a-40e6-b632-93504557308e\extracted_plane_8_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
3714992 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3714993 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3714994 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3714994 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3714995 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3714996 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3714996 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3714997 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3714997 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3714998 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3714999 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3714999 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3715000 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3715000 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3715001 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3715002 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3745952 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
3768796 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 815119b9-1134-49fb-8474-4802b87c34db with local backend
starting mc
3768938 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
3769062 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_9.tif'> shaped series axes do not match shape
3769917 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
3769917 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
3769918 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-37.0
<tifffile.TiffFile 'extracted_plane_9.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_9.tif'> shaped series axes do not match shape
3770381 [movies.py:apply_shifts():424] [29072] cubic interpolation
3770959 [movies.py:apply_shifts():424] [29072] cubic interpolation
3771506 [movies.py:apply_shifts():424] [29072] cubic interpolation
3771706 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 37.0
3771706 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
3771707 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_9.tif'> shaped series axes do not match shape
3771712 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3771713 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3771713 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3771714 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3771714 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3771715 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3771715 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3771716 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3771717 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3771717 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3771718 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3771718 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3771718 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3771719 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3771720 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3771720 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3771720 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3795732 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
3795860 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 37.0
3795860 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
3795860 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_9.tif
<tifffile.TiffFile 'extracted_plane_9.tif'> shaped series axes do not match shape
3795865 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3795866 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\815119b9-1134-49fb-8474-4802b87c34db\extracted_plane_9_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
3795866 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3795866 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3795867 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3795867 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3795868 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3795868 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3795869 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3795869 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3795870 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3795870 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3795870 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3795871 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3795871 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3795872 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3795872 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3795872 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3827911 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
3850179 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 2b934ad5-c218-4d5a-88a9-7c3ef36ea834 with local backend
starting mc
3850322 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
3850439 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_10.tif'> shaped series axes do not match shape
3851456 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
3851456 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
3851456 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-40.0
<tifffile.TiffFile 'extracted_plane_10.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_10.tif'> shaped series axes do not match shape
3851955 [movies.py:apply_shifts():424] [29072] cubic interpolation
3852463 [movies.py:apply_shifts():424] [29072] cubic interpolation
3852937 [movies.py:apply_shifts():424] [29072] cubic interpolation
3853122 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 40.0
3853122 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
3853123 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_10.tif'> shaped series axes do not match shape
3853128 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3853129 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3853130 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3853130 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3853131 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3853131 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3853132 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3853133 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3853133 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3853133 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3853134 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3853134 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3853135 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3853135 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3853136 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3853136 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3853136 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3876950 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
3877075 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 40.0
3877076 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
3877077 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_10.tif
<tifffile.TiffFile 'extracted_plane_10.tif'> shaped series axes do not match shape
3877081 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3877082 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\2b934ad5-c218-4d5a-88a9-7c3ef36ea834\extracted_plane_10_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
3877083 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3877083 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3877084 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3877085 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3877085 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3877086 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3877086 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3877087 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3877087 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3877088 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3877088 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3877089 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3877089 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3877090 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3877091 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3877091 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3909236 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
3932283 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running b0a5619f-2e53-421d-8e4a-2c132f52402b with local backend
starting mc
3932422 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
3932540 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_11.tif'> shaped series axes do not match shape
3934190 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
3934190 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
3934191 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-47.0
<tifffile.TiffFile 'extracted_plane_11.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_11.tif'> shaped series axes do not match shape
3934676 [movies.py:apply_shifts():424] [29072] cubic interpolation
3935219 [movies.py:apply_shifts():424] [29072] cubic interpolation
3935860 [movies.py:apply_shifts():424] [29072] cubic interpolation
3936057 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 47.0
3936057 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
3936058 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_11.tif'> shaped series axes do not match shape
3936062 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3936063 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3936063 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3936064 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3936064 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3936065 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3936065 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3936066 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3936066 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3936067 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3936068 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3936069 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3936069 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3936070 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3936070 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3936070 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3936071 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3960141 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
3960271 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 47.0
3960271 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
3960272 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_11.tif
<tifffile.TiffFile 'extracted_plane_11.tif'> shaped series axes do not match shape
3960276 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
3960277 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\b0a5619f-2e53-421d-8e4a-2c132f52402b\extracted_plane_11_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
3960278 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
3960278 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
3960278 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
3960279 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
3960279 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
3960280 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
3960280 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
3960281 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
3960281 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
3960281 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
3960282 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
3960282 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
3960283 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
3960283 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
3960284 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
3960284 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
3992406 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
4015355 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running b200d246-0e9d-4139-9d7e-99cfaf6570db with local backend
starting mc
4015497 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
4015611 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_12.tif'> shaped series axes do not match shape
4016562 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
4016562 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
4016563 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-57.0
<tifffile.TiffFile 'extracted_plane_12.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_12.tif'> shaped series axes do not match shape
4017077 [movies.py:apply_shifts():424] [29072] cubic interpolation
4017605 [movies.py:apply_shifts():424] [29072] cubic interpolation
4018126 [movies.py:apply_shifts():424] [29072] cubic interpolation
4018333 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 57.0
4018333 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
4018334 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_12.tif'> shaped series axes do not match shape
4018339 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4018339 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4018340 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4018340 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4018340 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4018341 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4018341 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4018342 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4018342 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4018342 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4018343 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4018343 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4018344 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4018345 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4018345 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4018345 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4018346 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4042523 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
4042653 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 57.0
4042653 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
4042654 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_12.tif
<tifffile.TiffFile 'extracted_plane_12.tif'> shaped series axes do not match shape
4042659 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4042660 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\b200d246-0e9d-4139-9d7e-99cfaf6570db\extracted_plane_12_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
4042661 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4042661 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4042662 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4042662 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4042663 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4042663 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4042664 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4042665 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4042665 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4042665 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4042667 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4042667 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4042668 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4042668 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4042668 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4042669 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4074936 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
4097770 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 83c32466-e08e-4095-a759-a0ce150ad42a with local backend
starting mc
4097915 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
4098019 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_13.tif'> shaped series axes do not match shape
4099031 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
4099032 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
4099032 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-53.0
<tifffile.TiffFile 'extracted_plane_13.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_13.tif'> shaped series axes do not match shape
4099317 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -5.0
4099317 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4099628 [movies.py:apply_shifts():424] [29072] cubic interpolation
4099922 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -5.0
4099922 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4100208 [movies.py:apply_shifts():424] [29072] cubic interpolation
4100467 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -5.0
4100468 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4100723 [movies.py:apply_shifts():424] [29072] cubic interpolation
4100907 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 53.0
4100907 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
4100908 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_13.tif'> shaped series axes do not match shape
4100912 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4100912 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4100913 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4100914 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4100915 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4100915 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4100916 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4100916 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4100917 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4100917 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4100918 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4100918 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4100919 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4100919 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4100920 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4100920 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4100921 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4125582 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
4125700 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 53.0
4125700 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
4125701 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_13.tif
<tifffile.TiffFile 'extracted_plane_13.tif'> shaped series axes do not match shape
4125705 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4125706 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\83c32466-e08e-4095-a759-a0ce150ad42a\extracted_plane_13_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
4125707 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4125707 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4125708 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4125708 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4125708 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4125709 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4125709 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4125710 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4125710 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4125711 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4125711 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4125712 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4125712 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4125713 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4125713 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4125713 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4157743 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
4180600 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 9a3d5048-d6f2-46e8-b869-e9306ecde5e3 with local backend
starting mc
4180740 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
4180850 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_14.tif'> shaped series axes do not match shape
4181828 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
4181829 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
4181829 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-56.0
<tifffile.TiffFile 'extracted_plane_14.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_14.tif'> shaped series axes do not match shape
4182071 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -11.0
4182071 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4182366 [movies.py:apply_shifts():424] [29072] cubic interpolation
4182649 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -11.0
4182649 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4182927 [movies.py:apply_shifts():424] [29072] cubic interpolation
4183194 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -11.0
4183195 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4183463 [movies.py:apply_shifts():424] [29072] cubic interpolation
4183648 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 56.0
4183649 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
4183650 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_14.tif'> shaped series axes do not match shape
4183654 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4183655 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4183655 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4183656 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4183657 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4183657 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4183658 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4183658 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4183660 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4183660 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4183661 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4183662 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4183662 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4183662 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4183663 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4183664 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4183664 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4207504 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
4207633 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 56.0
4207633 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
4207634 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_14.tif
<tifffile.TiffFile 'extracted_plane_14.tif'> shaped series axes do not match shape
4207638 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4207639 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\9a3d5048-d6f2-46e8-b869-e9306ecde5e3\extracted_plane_14_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
4207639 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4207640 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4207640 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4207641 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4207641 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4207642 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4207642 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4207643 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4207643 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4207643 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4207644 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4207644 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4207645 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4207645 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4207646 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4207646 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4239773 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
4263048 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 0eac92e7-a207-4253-887d-67d43cd95113 with local backend
starting mc
4263196 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
4263302 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_15.tif'> shaped series axes do not match shape
4264271 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
4264272 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
4264272 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-60.0
<tifffile.TiffFile 'extracted_plane_15.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_15.tif'> shaped series axes do not match shape
4264542 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -15.0
4264542 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4264809 [movies.py:apply_shifts():424] [29072] cubic interpolation
4265098 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -15.0
4265099 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4265362 [movies.py:apply_shifts():424] [29072] cubic interpolation
4265638 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -15.0
4265639 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4265914 [movies.py:apply_shifts():424] [29072] cubic interpolation
4266110 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 60.0
4266110 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
4266111 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_15.tif'> shaped series axes do not match shape
4266116 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4266116 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4266117 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4266117 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4266118 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4266118 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4266119 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4266119 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4266120 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4266120 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4266121 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4266121 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4266122 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4266122 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4266123 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4266123 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4266124 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4290519 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
4290679 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 60.0
4290680 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
4290680 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_15.tif
<tifffile.TiffFile 'extracted_plane_15.tif'> shaped series axes do not match shape
4290685 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4290686 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\0eac92e7-a207-4253-887d-67d43cd95113\extracted_plane_15_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
4290687 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4290688 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4290689 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4290690 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4290690 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4290691 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4290692 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4290692 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4290693 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4290694 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4290695 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4290695 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4290696 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4290696 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4290697 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4290697 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4323567 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
4345896 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 0dea60c2-2f90-4dc4-9a89-908a832e24c6 with local backend
starting mc
4346025 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
4346129 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_16.tif'> shaped series axes do not match shape
4347176 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
4347176 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
4347176 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-83.0
<tifffile.TiffFile 'extracted_plane_16.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_16.tif'> shaped series axes do not match shape
4347383 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -19.0
4347384 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4347685 [movies.py:apply_shifts():424] [29072] cubic interpolation
4347952 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -19.0
4347953 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4348259 [movies.py:apply_shifts():424] [29072] cubic interpolation
4348577 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -19.0
4348577 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4348885 [movies.py:apply_shifts():424] [29072] cubic interpolation
4349092 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 83.0
4349093 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
4349094 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_16.tif'> shaped series axes do not match shape
4349098 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4349099 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4349099 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4349100 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4349101 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4349101 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4349102 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4349103 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4349103 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4349104 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4349105 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4349105 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4349106 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4349106 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4349107 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4349107 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4349107 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4374794 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
4374933 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 83.0
4374933 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
4374934 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_16.tif
<tifffile.TiffFile 'extracted_plane_16.tif'> shaped series axes do not match shape
4374938 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4374940 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\0dea60c2-2f90-4dc4-9a89-908a832e24c6\extracted_plane_16_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
4374940 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4374941 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4374941 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4374942 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4374942 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4374942 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4374943 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4374943 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4374944 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4374944 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4374945 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4374945 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4374946 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4374946 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4374947 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4374947 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4407006 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
4429531 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 7d540ed9-c9f3-499a-a121-a268271c95f6 with local backend
starting mc
4429677 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
4429806 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_17.tif'> shaped series axes do not match shape
4430781 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
4430782 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
4430782 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-71.0
<tifffile.TiffFile 'extracted_plane_17.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_17.tif'> shaped series axes do not match shape
4431000 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -23.0
4431001 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4431260 [movies.py:apply_shifts():424] [29072] cubic interpolation
4431562 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -23.0
4431563 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4431826 [movies.py:apply_shifts():424] [29072] cubic interpolation
4432072 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -23.0
4432073 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4432342 [movies.py:apply_shifts():424] [29072] cubic interpolation
4432531 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 71.0
4432531 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
4432532 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_17.tif'> shaped series axes do not match shape
4432537 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4432538 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4432539 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4432539 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4432540 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4432540 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4432541 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4432542 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4432542 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4432543 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4432544 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4432544 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4432545 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4432545 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4432546 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4432546 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4432547 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4456999 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
4457115 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 71.0
4457116 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
4457116 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_17.tif
<tifffile.TiffFile 'extracted_plane_17.tif'> shaped series axes do not match shape
4457121 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4457122 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\7d540ed9-c9f3-499a-a121-a268271c95f6\extracted_plane_17_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
4457123 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4457123 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4457124 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4457124 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4457125 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4457125 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4457127 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4457127 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4457128 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4457128 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4457129 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4457130 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4457130 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4457131 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4457131 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4457131 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4488633 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
4511352 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 81e688aa-2e5b-4fc5-87e3-e67ab2c44d20 with local backend
starting mc
4511503 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
4511610 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_18.tif'> shaped series axes do not match shape
4512556 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
4512557 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
4512557 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-110.0
<tifffile.TiffFile 'extracted_plane_18.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_18.tif'> shaped series axes do not match shape
4513163 [movies.py:apply_shifts():424] [29072] cubic interpolation
4513705 [movies.py:apply_shifts():424] [29072] cubic interpolation
4514235 [movies.py:apply_shifts():424] [29072] cubic interpolation
4514434 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 110.0
4514435 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
4514436 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_18.tif'> shaped series axes do not match shape
4514441 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4514441 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4514442 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4514443 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4514443 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4514444 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4514445 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4514445 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4514446 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4514447 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4514447 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4514448 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4514449 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4514449 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4514450 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4514451 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4514451 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4537980 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
4538092 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 110.0
4538092 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
4538093 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_18.tif
<tifffile.TiffFile 'extracted_plane_18.tif'> shaped series axes do not match shape
4538097 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4538098 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\81e688aa-2e5b-4fc5-87e3-e67ab2c44d20\extracted_plane_18_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
4538098 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4538099 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4538099 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4538100 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4538100 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4538101 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4538101 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4538102 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4538103 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4538103 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4538104 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4538104 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4538105 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4538106 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4538106 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4538106 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4569664 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
4592174 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 494267f7-3659-4e00-bd1b-13a682d64c3a with local backend
starting mc
4592330 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
4592433 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_19.tif'> shaped series axes do not match shape
4593453 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
4593454 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
4593454 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-73.0
<tifffile.TiffFile 'extracted_plane_19.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_19.tif'> shaped series axes do not match shape
4593959 [movies.py:apply_shifts():424] [29072] cubic interpolation
4594555 [movies.py:apply_shifts():424] [29072] cubic interpolation
4595129 [movies.py:apply_shifts():424] [29072] cubic interpolation
4595344 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 73.0
4595345 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
4595345 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_19.tif'> shaped series axes do not match shape
4595349 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4595350 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4595350 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4595351 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4595351 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4595352 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4595352 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4595353 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4595353 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4595354 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4595354 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4595355 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4595355 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4595356 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4595356 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4595356 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4595357 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4619442 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
4619557 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 73.0
4619558 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
4619558 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_19.tif
<tifffile.TiffFile 'extracted_plane_19.tif'> shaped series axes do not match shape
4619563 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4619564 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\494267f7-3659-4e00-bd1b-13a682d64c3a\extracted_plane_19_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
4619564 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4619564 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4619565 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4619566 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4619566 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4619567 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4619567 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4619567 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4619568 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4619568 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4619569 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4619570 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4619571 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4619571 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4619571 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4619572 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4652771 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
4675499 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 91e15f4e-4a24-4359-b46a-4f940f43a5f2 with local backend
starting mc
4675618 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
4675717 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_20.tif'> shaped series axes do not match shape
4676585 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
4676585 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
4676586 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-71.0
<tifffile.TiffFile 'extracted_plane_20.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_20.tif'> shaped series axes do not match shape
4677004 [movies.py:apply_shifts():424] [29072] cubic interpolation
4677501 [movies.py:apply_shifts():424] [29072] cubic interpolation
4678098 [movies.py:apply_shifts():424] [29072] cubic interpolation
4678309 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 71.0
4678310 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
4678311 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_20.tif'> shaped series axes do not match shape
4678314 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4678315 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4678315 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4678316 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4678316 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4678317 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4678317 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4678318 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4678318 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4678319 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4678319 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4678320 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4678320 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4678320 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4678321 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4678322 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4678323 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4702781 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
4702896 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 71.0
4702897 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
4702897 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_20.tif
<tifffile.TiffFile 'extracted_plane_20.tif'> shaped series axes do not match shape
4702901 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4702902 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\91e15f4e-4a24-4359-b46a-4f940f43a5f2\extracted_plane_20_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
4702903 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4702903 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4702903 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4702904 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4702905 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4702905 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4702906 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4702906 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4702906 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4702907 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4702907 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4702908 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4702909 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4702909 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4702909 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4702910 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4734786 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
4757522 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running ce3ddb5f-6eb5-405d-9709-64ddca398408 with local backend
starting mc
4757671 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
4757775 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_21.tif'> shaped series axes do not match shape
4759547 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
4759548 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
4759548 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-79.0
<tifffile.TiffFile 'extracted_plane_21.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_21.tif'> shaped series axes do not match shape
4759799 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -9.0
4759799 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4760092 [movies.py:apply_shifts():424] [29072] cubic interpolation
4760372 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -9.0
4760372 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4760644 [movies.py:apply_shifts():424] [29072] cubic interpolation
4760877 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -9.0
4760877 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4761140 [movies.py:apply_shifts():424] [29072] cubic interpolation
4761333 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 79.0
4761334 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
4761335 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_21.tif'> shaped series axes do not match shape
4761338 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4761339 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4761340 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4761340 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4761341 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4761341 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4761341 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4761342 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4761343 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4761343 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4761344 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4761344 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4761345 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4761345 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4761345 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4761346 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4761346 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4785405 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
4785541 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 79.0
4785542 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
4785542 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_21.tif
<tifffile.TiffFile 'extracted_plane_21.tif'> shaped series axes do not match shape
4785547 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4785548 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\ce3ddb5f-6eb5-405d-9709-64ddca398408\extracted_plane_21_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
4785549 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4785549 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4785550 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4785550 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4785551 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4785551 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4785552 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4785552 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4785553 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4785553 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4785554 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4785554 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4785555 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4785555 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4785555 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4785556 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4817174 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
4839858 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 1808716b-35a5-4bb7-a7d3-62778918084d with local backend
starting mc
4839977 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
4840086 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_22.tif'> shaped series axes do not match shape
4840953 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
4840954 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
4840954 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-84.0
<tifffile.TiffFile 'extracted_plane_22.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_22.tif'> shaped series axes do not match shape
4841244 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -15.0
4841245 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4841597 [movies.py:apply_shifts():424] [29072] cubic interpolation
4841921 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -15.0
4841921 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4842211 [movies.py:apply_shifts():424] [29072] cubic interpolation
4842536 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -15.0
4842536 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4842844 [movies.py:apply_shifts():424] [29072] cubic interpolation
4843035 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 84.0
4843035 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
4843036 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_22.tif'> shaped series axes do not match shape
4843041 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4843042 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4843042 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4843043 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4843044 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4843044 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4843045 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4843045 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4843046 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4843046 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4843047 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4843047 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4843048 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4843049 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4843049 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4843049 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4843050 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4867156 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
4867279 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 84.0
4867280 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
4867281 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_22.tif
<tifffile.TiffFile 'extracted_plane_22.tif'> shaped series axes do not match shape
4867286 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4867287 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\1808716b-35a5-4bb7-a7d3-62778918084d\extracted_plane_22_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
4867287 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4867288 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4867288 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4867289 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4867289 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4867290 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4867290 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4867291 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4867291 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4867292 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4867292 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4867293 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4867293 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4867294 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4867294 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4867295 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4898978 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
4921453 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 5784d042-f190-4105-b015-04f40130dc18 with local backend
starting mc
4921573 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
4921671 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_23.tif'> shaped series axes do not match shape
4922690 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
4922690 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
4922690 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-91.0
<tifffile.TiffFile 'extracted_plane_23.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_23.tif'> shaped series axes do not match shape
4922898 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -18.0
4922899 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4923162 [movies.py:apply_shifts():424] [29072] cubic interpolation
4923420 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -18.0
4923421 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4923693 [movies.py:apply_shifts():424] [29072] cubic interpolation
4923940 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -18.0
4923940 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
4924208 [movies.py:apply_shifts():424] [29072] cubic interpolation
4924420 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 91.0
4924421 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
4924421 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_23.tif'> shaped series axes do not match shape
4924425 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4924426 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4924427 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4924427 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4924428 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4924429 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4924429 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4924430 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4924430 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4924431 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4924431 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4924432 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4924432 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4924433 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4924433 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4924434 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4924434 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4948438 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
4948553 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 91.0
4948554 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
4948554 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_23.tif
<tifffile.TiffFile 'extracted_plane_23.tif'> shaped series axes do not match shape
4948558 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
4948559 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\5784d042-f190-4105-b015-04f40130dc18\extracted_plane_23_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
4948560 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
4948560 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
4948560 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
4948561 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
4948562 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
4948562 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
4948563 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
4948563 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
4948564 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
4948564 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
4948564 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
4948565 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
4948565 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
4948566 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
4948566 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
4948566 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
4980437 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
5002959 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running dd42d981-b7a7-48c5-8c8c-45d58501d47d with local backend
starting mc
5003117 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
5003230 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_24.tif'> shaped series axes do not match shape
5004104 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
5004105 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
5004105 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-101.0
<tifffile.TiffFile 'extracted_plane_24.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_24.tif'> shaped series axes do not match shape
5004319 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -23.0
5004320 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5004576 [movies.py:apply_shifts():424] [29072] cubic interpolation
5004821 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -23.0
5004822 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5005082 [movies.py:apply_shifts():424] [29072] cubic interpolation
5005362 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -23.0
5005363 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5005645 [movies.py:apply_shifts():424] [29072] cubic interpolation
5005848 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 101.0
5005849 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
5005849 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_24.tif'> shaped series axes do not match shape
5005854 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
5005854 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
5005855 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
5005855 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
5005856 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
5005856 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
5005857 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
5005857 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
5005858 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
5005859 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
5005859 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
5005860 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
5005860 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
5005860 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
5005861 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
5005861 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
5005861 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
5029900 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
5030032 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 101.0
5030032 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
5030033 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_24.tif
<tifffile.TiffFile 'extracted_plane_24.tif'> shaped series axes do not match shape
5030037 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
5030038 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\dd42d981-b7a7-48c5-8c8c-45d58501d47d\extracted_plane_24_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
5030039 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
5030039 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
5030040 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
5030040 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
5030041 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
5030041 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
5030042 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
5030042 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
5030043 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
5030043 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
5030044 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
5030044 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
5030045 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
5030046 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
5030047 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
5030047 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
5061484 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
5085024 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running fe332115-db88-4765-b7d8-bb7d123483d6 with local backend
starting mc
5085175 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
5085308 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_25.tif'> shaped series axes do not match shape
5086237 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
5086238 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
5086238 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-89.0
<tifffile.TiffFile 'extracted_plane_25.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_25.tif'> shaped series axes do not match shape
5086462 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -22.0
5086462 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5086721 [movies.py:apply_shifts():424] [29072] cubic interpolation
5086984 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -22.0
5086985 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5087251 [movies.py:apply_shifts():424] [29072] cubic interpolation
5087532 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -22.0
5087533 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5087817 [movies.py:apply_shifts():424] [29072] cubic interpolation
5088006 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 89.0
5088007 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
5088007 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_25.tif'> shaped series axes do not match shape
5088011 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
5088011 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
5088012 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
5088013 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
5088013 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
5088013 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
5088014 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
5088014 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
5088015 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
5088016 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
5088016 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
5088017 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
5088017 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
5088017 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
5088018 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
5088018 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
5088019 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
5113005 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
5113120 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 89.0
5113120 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
5113121 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_25.tif
<tifffile.TiffFile 'extracted_plane_25.tif'> shaped series axes do not match shape
5113126 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
5113127 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\fe332115-db88-4765-b7d8-bb7d123483d6\extracted_plane_25_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
5113127 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
5113128 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
5113129 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
5113129 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
5113129 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
5113130 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
5113130 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
5113131 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
5113132 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
5113132 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
5113132 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
5113133 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
5113134 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
5113134 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
5113134 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
5113135 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
5146744 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
5169707 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running c3383064-ae07-4fe6-af82-a907d69ad79d with local backend
starting mc
5169841 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
5169960 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_26.tif'> shaped series axes do not match shape
5171032 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
5171033 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
5171033 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-86.0
<tifffile.TiffFile 'extracted_plane_26.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_26.tif'> shaped series axes do not match shape
5171260 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -25.0
5171261 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5171530 [movies.py:apply_shifts():424] [29072] cubic interpolation
5171804 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -25.0
5171804 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5172057 [movies.py:apply_shifts():424] [29072] cubic interpolation
5172320 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -25.0
5172321 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5172581 [movies.py:apply_shifts():424] [29072] cubic interpolation
5172758 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 86.0
5172759 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
5172760 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_26.tif'> shaped series axes do not match shape
5172764 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
5172765 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
5172765 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
5172766 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
5172766 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
5172767 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
5172768 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
5172768 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
5172769 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
5172770 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
5172770 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
5172771 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
5172772 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
5172772 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
5172773 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
5172773 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
5172773 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
5196779 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
5196908 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 86.0
5196908 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
5196909 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_26.tif
<tifffile.TiffFile 'extracted_plane_26.tif'> shaped series axes do not match shape
5196913 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
5196914 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\c3383064-ae07-4fe6-af82-a907d69ad79d\extracted_plane_26_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
5196914 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
5196914 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
5196915 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
5196915 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
5196916 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
5196916 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
5196917 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
5196917 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
5196918 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
5196918 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
5196918 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
5196919 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
5196920 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
5196920 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
5196920 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
5196921 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
5228557 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
5251044 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 47e076e1-6c2c-48d2-96c0-e7f48c3b6155 with local backend
starting mc
5251175 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
5251282 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_27.tif'> shaped series axes do not match shape
5252120 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
5252120 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
5252121 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-102.0
<tifffile.TiffFile 'extracted_plane_27.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_27.tif'> shaped series axes do not match shape
5252410 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -27.0
5252411 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5252776 [movies.py:apply_shifts():424] [29072] cubic interpolation
5253144 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -27.0
5253144 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5253449 [movies.py:apply_shifts():424] [29072] cubic interpolation
5253762 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -27.0
5253763 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5254059 [movies.py:apply_shifts():424] [29072] cubic interpolation
5254274 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 102.0
5254275 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
5254276 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_27.tif'> shaped series axes do not match shape
5254280 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
5254281 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
5254282 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
5254282 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
5254283 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
5254283 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
5254284 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
5254284 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
5254285 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
5254285 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
5254286 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
5254286 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
5254287 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
5254287 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
5254288 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
5254288 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
5254289 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
5278796 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
5278923 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 102.0
5278924 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
5278924 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_27.tif
<tifffile.TiffFile 'extracted_plane_27.tif'> shaped series axes do not match shape
5278928 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
5278930 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\47e076e1-6c2c-48d2-96c0-e7f48c3b6155\extracted_plane_27_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
5278930 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
5278931 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
5278931 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
5278932 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
5278933 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
5278933 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
5278934 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
5278934 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
5278934 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
5278935 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
5278935 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
5278936 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
5278936 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
5278937 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
5278937 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
5278938 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
5311281 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
5334068 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running ee1c326b-1718-4e69-b6b2-36726b3acc18 with local backend
starting mc
5334198 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
5334298 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_28.tif'> shaped series axes do not match shape
5335184 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
5335184 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
5335184 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-90.0
<tifffile.TiffFile 'extracted_plane_28.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_28.tif'> shaped series axes do not match shape
5335448 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -26.0
5335449 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5335700 [movies.py:apply_shifts():424] [29072] cubic interpolation
5336005 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -26.0
5336006 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5336283 [movies.py:apply_shifts():424] [29072] cubic interpolation
5336626 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -26.0
5336627 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5336911 [movies.py:apply_shifts():424] [29072] cubic interpolation
5337109 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 90.0
5337109 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
5337110 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_28.tif'> shaped series axes do not match shape
5337114 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
5337115 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
5337115 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
5337116 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
5337116 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
5337117 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
5337117 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
5337118 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
5337118 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
5337119 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
5337119 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
5337120 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
5337120 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
5337121 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
5337122 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
5337122 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
5337122 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
5361521 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
5361649 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 90.0
5361650 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
5361651 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_28.tif
<tifffile.TiffFile 'extracted_plane_28.tif'> shaped series axes do not match shape
5361655 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
5361657 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\ee1c326b-1718-4e69-b6b2-36726b3acc18\extracted_plane_28_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
5361657 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
5361658 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
5361658 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
5361659 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
5361660 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
5361660 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
5361661 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
5361662 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
5361662 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
5361663 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
5361663 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
5361664 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
5361664 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
5361665 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
5361665 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
5361666 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
5394424 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
5417204 [cluster.py:stop_server():176] [29072] stop_cluster(): done
Running 5f1223e3-6473-43b8-9e86-cd03792053d1 with local backend
starting mc
5417332 [cluster.py:setup_cluster():225] [29072] The local backend is an alias for the multiprocessing backend, and the alias may be removed in some future version of Caiman
5417427 [params.py:change_params():1151] [29072] In setting CNMFParams, non-pathed parameters were used; this is deprecated. In some future version of Caiman, allow_legacy will default to False (and eventually will be removed)
<tifffile.TiffFile 'extracted_plane_29.tif'> shaped series axes do not match shape
5418310 [motion_correction.py:motion_correct_pwrigid():348] [29072] Generating template by rigid motion correction
5418310 [motion_correction.py:motion_correct_rigid():285] [29072] Entering Rigid Motion Correction
5418311 [motion_correction.py:motion_correct_rigid():286] [29072] self.min_mov=-81.0
<tifffile.TiffFile 'extracted_plane_29.tif'> shaped series axes do not match shape
<tifffile.TiffFile 'extracted_plane_29.tif'> shaped series axes do not match shape
5418561 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -27.0
5418562 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5418581 [movies.py:extract_shifts():344] [29072] Movie average is negative. Removing 1st percentile.
5418840 [movies.py:apply_shifts():424] [29072] cubic interpolation
5419137 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -27.0
5419138 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5419164 [movies.py:extract_shifts():344] [29072] Movie average is negative. Removing 1st percentile.
5419464 [movies.py:apply_shifts():424] [29072] cubic interpolation
5419761 [movies.py:extract_shifts():325] [29072] min_val in extract_shifts: -27.0
5419762 [movies.py:extract_shifts():326] [29072] Movie average is negative. Removing 1st percentile.
5419776 [movies.py:extract_shifts():344] [29072] Movie average is negative. Removing 1st percentile.
5420068 [movies.py:apply_shifts():424] [29072] cubic interpolation
5420268 [motion_correction.py:motion_correct_batch_rigid():2826] [29072] Adding to movie 81.0
5420268 [motion_correction.py:motion_correct_batch_rigid():2832] [29072] 0
5420269 [motion_correction.py:motion_correct_batch_rigid():2836] [29072] saving!
<tifffile.TiffFile 'extracted_plane_29.tif'> shaped series axes do not match shape
5420273 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
5420274 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
5420274 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
5420275 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
5420275 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
5420275 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
5420276 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
5420276 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
5420277 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
5420277 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
5420278 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
5420278 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
5420279 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
5420279 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
5420280 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
5420281 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
5420281 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
5444679 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
5444799 [motion_correction.py:motion_correct_batch_pwrigid():2949] [29072] Adding to movie 81.0
5444800 [motion_correction.py:motion_correct_batch_pwrigid():2952] [29072] 0
5444800 [motion_correction.py:motion_correct_batch_pwrigid():2962] [29072] saving mmap of C:\Users\RBO\caiman_data\animal_01\session_01\tiff\extracted_plane_29.tif
<tifffile.TiffFile 'extracted_plane_29.tif'> shaped series axes do not match shape
5444805 [motion_correction.py:motion_correction_piecewise():3107] [29072] Number of Splits: 14
5444807 [motion_correction.py:motion_correction_piecewise():3136] [29072] Saving file as C:\Users\RBO\caiman_data\animal_01\session_01\5f1223e3-6473-43b8-9e86-cd03792053d1\extracted_plane_29_els__d1_583_d2_536_d3_1_order_F_frames_1730.mmap
5444807 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123]
5444807 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177
178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195
196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213
214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231
232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247]
5444808 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265
266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319
320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355
356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371]
5444809 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389
390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407
408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425
426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443
444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461
462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479
480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495]
5444809 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513
514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567
568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619]
5444810 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637
638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655
656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691
692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709
710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727
728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743]
5444810 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761
762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779
780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797
798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815
816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833
834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851
852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867]
5444811 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885
886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903
904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921
922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939
940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957
958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975
976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991]
5444811 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [ 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005
1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019
1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033
1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047
1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061
1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075
1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089
1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103
1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114]
5444812 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128
1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142
1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156
1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170
1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184
1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198
1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212
1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226
1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237]
5444813 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251
1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265
1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279
1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293
1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307
1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321
1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335
1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349
1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360]
5444813 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374
1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388
1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402
1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416
1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430
1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444
1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472
1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483]
5444814 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497
1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511
1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525
1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539
1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553
1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567
1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581
1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595
1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606]
5444814 [motion_correction.py:motion_correction_piecewise():3142] [29072] Extracting parameters for frames: [1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620
1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634
1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648
1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662
1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676
1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690
1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704
1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718
1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729]
5444815 [motion_correction.py:motion_correction_piecewise():3149] [29072] ** Starting parallel motion correction **
5444815 [motion_correction.py:motion_correction_piecewise():3154] [29072] entering multiprocessing tile_and_correct_wrapper
5476822 [motion_correction.py:motion_correction_piecewise():3158] [29072] ** Finished parallel motion correction **
mc finished successfully!
computing projections
Computing correlation image
finished computing correlation image
5499717 [cluster.py:stop_server():176] [29072] stop_cluster(): done